C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage gated channel, Shaw-related subfamily, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160433 Kcnc1-002 ENSMUSG00000058975 10090 + 7:46397648-46438375 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000160433
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000160433 0.009±0.00 0.193±0.08 0.041±0.00 10.949±7.40 0.813±0.37 0.204±0.04 0.028±0.02 0.009±0.01 0.104±0.00 3.003±0.37 0.053±0.03 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000448 CIL_000448_0002 CGP 7:46376474-46438375
CIL_000418 CIL_000418_0003 CGP 7:46396497-46639807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0008076 IEA voltage-gated potassium channel complex
GO:0019894 IDA kinesin binding
GO:0030673 IDA axolemma
GO:0032590 IDA dendrite membrane
GO:0032809 IDA neuronal cell body membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0051260 IEA protein homooligomerization
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000078249 kcnc3a-201 protein_coding Danio_rerio 0 599
ENSDART00000148662 kcnc3a-002 protein_coding Danio_rerio 0 599
ENSDART00000148861 kcnc3a-001 protein_coding Danio_rerio 0 599
ENSDART00000087293 kcnc4-201 protein_coding Danio_rerio 0 215
ENSDART00000146805 kcnc4-001 protein_coding Danio_rerio 0 215
ENST00000265969 KCNC1-002 protein_coding Homo_sapiens 0 3554
ENST00000298972 KCNC2-201 protein_coding Homo_sapiens 0 281
ENST00000350228 KCNC2-004 protein_coding Homo_sapiens 0 281
ENST00000369787 KCNC4-004 protein_coding Homo_sapiens 0 898
ENST00000376959 KCNC3-002 protein_coding Homo_sapiens 0 704
ENST00000379472 KCNC1-001 protein_coding Homo_sapiens 0 2302
ENST00000393288 KCNC2-002 protein_coding Homo_sapiens 0 281
ENST00000413138 KCNC4-006 protein_coding Homo_sapiens 0 898
ENST00000438661 KCNC4-003 protein_coding Homo_sapiens 0 898
ENST00000459877 KCNC4-002 retained_intron Homo_sapiens 0 686
ENST00000469655 KCNC4-001 nonsense_mediated_decay Homo_sapiens 0 898
ENST00000477616 KCNC3-005 protein_coding Homo_sapiens 0 704
ENST00000489935 KCNC4-005 retained_intron Homo_sapiens 0 898
ENST00000525802 KCNC1-004 processed_transcript Homo_sapiens 0 350
ENST00000526029 KCNC1-003 retained_intron Homo_sapiens 0 1256
ENST00000540018 KCNC2-003 protein_coding Homo_sapiens 0 281
ENST00000548513 KCNC2-006 protein_coding Homo_sapiens 0 281
ENST00000549446 KCNC2-001 protein_coding Homo_sapiens 0 281
ENST00000550433 KCNC2-005 protein_coding Homo_sapiens 0 281

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