C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane channel-like gene family 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060332 Tmc2 10090 + 2:130195194-130264445 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077988 Tmc2-001 130195194-130264445 protein_coding
  ENSMUST00000166774 Tmc2-201 130196543-130264217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077988ENSMUST00000166774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077988 0.031±0.00 0.025±0.00 0.005±0.00 0.006±0.00 0.022±0.01 0.032±0.01 0.028±0.01 0.018±0.01 0.023±0.01 0.030±0.01 N/A 0.077±0.05 0.014±0.01 0.113±0.04
ENSMUST00000166774 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 0.081±0.04 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FW CIL_0000FW_0002 CGP 2:130195194-130279313

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IGI voltage-gated calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0032426 IDA stereocilium bundle tip
GO:0050910 IGI detection of mechanical stimulus involved in sensory perception of sound
GO:0060005 IGI vestibular reflex
GO:0070588 IGI calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030311 TMC2 (1 of 2) transmembrane channel-like 2 protein_coding Danio_rerio
ENSDARG00000033104 TMC2 (2 of 2) transmembrane channel-like 2 protein_coding Danio_rerio
ENSG00000149488 TMC2 transmembrane channel-like 2 protein_coding Homo_sapiens

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