C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077988 Tmc2-001 ENSMUSG00000060332 10090 + 2:130195194-130264445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000077988
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000077988 0.031±0.00 0.025±0.00 0.005±0.00 0.006±0.00 0.022±0.01 0.032±0.01 0.028±0.01 0.018±0.01 0.023±0.01 0.030±0.01 0.077±0.05 0.014±0.01 0.113±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FW CIL_0000FW_0002 CGP 2:130195194-130279313

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IGI voltage-gated calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0032426 IDA stereocilium bundle tip
GO:0050910 IGI detection of mechanical stimulus involved in sensory perception of sound
GO:0060005 IGI vestibular reflex
GO:0070588 IGI calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358864 TMC2-001 protein_coding Homo_sapiens 0 2695
ENST00000496948 TMC2-002 processed_transcript Homo_sapiens 0 712

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