C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000FW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000149488-ENSG00000101361 CGP 9606 20:2536607-2658393
GeneTranscriptPositionBiotype
ENSG00000101361 (NOP56)
NOP56 ribonucleoprotein 		ENST00000329276 (NOP56-009) 2652145-2658393 protein_coding
ENST00000415272 (NOP56-010) 2655616-2658359 protein_coding
ENST00000445139 (NOP56-016) 2652649-2655512 protein_coding
ENST00000460258 (NOP56-015) 2653001-2655512 processed_transcript
ENST00000462630 (NOP56-005) 2656640-2658393 processed_transcript
ENST00000466447 (NOP56-006) 2656111-2658393 processed_transcript
ENST00000467196 (NOP56-007) 2655436-2658393 nonsense_mediated_decay
ENST00000467857 (NOP56-008) 2656949-2658393 processed_transcript
ENST00000469588 (NOP56-002) 2652646-2655512 processed_transcript
ENST00000470143 (NOP56-014) 2652633-2653820 processed_transcript
ENST00000471023 (NOP56-018) 2656410-2657225 processed_transcript
ENST00000480447 (NOP56-004) 2656159-2657218 processed_transcript
ENST00000480992 (NOP56-003) 2654789-2656549 processed_transcript
ENST00000484998 (NOP56-017) 2655097-2656549 processed_transcript
ENST00000490753 (NOP56-001) 2656401-2657449 processed_transcript
ENST00000492135 (NOP56-011) 2655946-2658393 processed_transcript
ENST00000494697 (NOP56-012) 2652632-2655512 processed_transcript
ENST00000496775 (NOP56-013) 2654234-2655512 processed_transcript
ENST00000612233 (NOP56-019) 2655413-2658392 retained_intron
ENST00000616692 (NOP56-020) 2655547-2658393 retained_intron
ENSG00000149488 (TMC2)
transmembrane channel-like 2 		ENST00000358864 (TMC2-001) 2536607-2641784 protein_coding
ENST00000496948 (TMC2-002) 2602166-2618379 processed_transcript

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0000FW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060332-ENSMUSG00000027405 CGP 10090 2:130195194-130279313
GeneTranscriptPositionBiotype
ENSMUSG00000027406 (Idh3b)
isocitrate dehydrogenase 3 (NAD+) beta 		ENSMUST00000028892 (Idh3b-001) 130279309-130284547 protein_coding
ENSMUST00000124868 (Idh3b-003) 130283663-130284415 retained_intron
ENSMUST00000149843 (Idh3b-002) 130282145-130284434 retained_intron
ENSMUST00000184538 (Idh3b-004) 130279313-130280551 nonsense_mediated_decay
ENSMUSG00000060332 (Tmc2)
transmembrane channel-like gene family 2 		ENSMUST00000077988 (Tmc2-001) 130195194-130264445 protein_coding
ENSMUST00000166774 (Tmc2-201) 130196543-130264217 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FW_0001ENSG00000101361ENST00000329276ENST00000415272ENST00000445139ENST00000460258ENST00000462630ENST00000466447ENST00000467196ENST00000467857ENST00000469588ENST00000470143ENST00000471023ENST00000480447ENST00000480992ENST00000484998ENST00000490753ENST00000492135ENST00000494697ENST00000496775ENST00000612233ENST00000616692ENSG00000149488ENST00000358864ENST00000496948CIL_0000FW_0002ENSMUSG00000027406ENSMUST00000028892ENSMUST00000124868ENSMUST00000149843ENSMUST00000184538ENSMUSG00000060332ENSMUST00000077988ENSMUST00000166774
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FW_0001ENSG00000101361ENST00000329276ENST00000415272ENST00000462630ENST00000466447ENST00000467196ENST00000467857ENST00000469588ENST00000480447ENST00000480992ENST00000490753ENST00000492135ENST00000496775ENSG00000149488ENST00000358864ENST00000496948CIL_0000FW_0002ENSMUSG00000027406ENSMUST00000028892ENSMUSG00000060332ENSMUST00000077988ENSMUST00000166774
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101361 ENST00000329276 18.929±0.00 34.755±0.00 2.445±0.00 20.981±9.95 14.103±5.89 14.941±8.76 4.265±2.96 22.500±0.00 9.792±4.05 6.588±3.72 28.545±0.00 25.531±22.34 20.523±11.88 37.590±0.00
ENST00000415272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.903±0.00 11.586±0.00 N/A N/A
ENST00000445139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462630 N/A 46.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.037±0.00 N/A N/A
ENST00000466447 N/A N/A N/A N/A N/A N/A N/A 1.272±0.00 N/A N/A N/A N/A N/A N/A
ENST00000467196 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.915±0.00 N/A N/A N/A N/A
ENST00000467857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.551±0.00 N/A N/A N/A
ENST00000469588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.463±0.00 22.521±0.00
ENST00000470143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 88.939±0.00 23.156±0.00 30.190±0.00
ENST00000480992 N/A N/A N/A N/A N/A N/A 5.453±0.00 4.038±0.00 N/A N/A N/A N/A N/A N/A
ENST00000484998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490753 N/A N/A N/A N/A N/A N/A N/A 8.053±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492135 N/A N/A N/A N/A 8.177±0.00 N/A N/A N/A N/A N/A N/A 15.065±0.00 N/A N/A
ENST00000494697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496775 N/A N/A N/A N/A N/A 12.015±0.00 3.304±0.00 5.602±0.00 11.480±0.00 5.482±0.00 9.345±0.00 N/A N/A N/A
ENST00000612233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000149488 ENST00000358864 0.208±0.00 0.040±0.00 N/A 0.011±0.00 0.089±0.00 0.157±0.00 0.016±0.00 N/A 0.029±0.02 0.494±0.00 0.054±0.00 0.026±0.00 N/A 0.130±0.08
ENST00000496948 0.063±0.00 0.122±0.00 N/A N/A 0.161±0.00 0.079±0.00 0.061±0.00 0.085±0.00 0.004±0.00 0.084±0.00 0.017±0.00 0.018±0.00 N/A 0.160±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027406 ENSMUST00000028892 168.002±25.58 139.810±44.69 109.120±21.23 93.303±14.06 160.176±63.02 109.528±19.48 200.227±112.49 243.122±12.44 128.657±19.80 62.510±8.55 179.941±14.72 89.900±17.99 79.963±21.22 65.809±14.20
ENSMUST00000124868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000060332 ENSMUST00000077988 0.031±0.00 0.025±0.00 0.005±0.00 0.006±0.00 0.022±0.01 0.032±0.01 0.028±0.01 0.018±0.01 0.023±0.01 0.030±0.01 N/A 0.077±0.05 0.014±0.01 0.113±0.04
ENSMUST00000166774 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 0.081±0.04 N/A N/A

Loading