C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat transmembrane neuronal 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060780 Lrrtm1 10090 + 6:77242689-77257791 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020400 Lrrtm1-003 77242689-77257791 nonsense_mediated_decay
  ENSMUST00000159616 Lrrtm1-001 77242697-77245517 protein_coding
  ENSMUST00000161677 Lrrtm1-002 77242718-77245511 protein_coding
  ENSMUST00000161811 Lrrtm1-004 77242922-77244112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020400ENSMUST00000159616ENSMUST00000161677ENSMUST00000161811
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020400 N/A N/A N/A 2.817±0.00 N/A 0.205±0.00 N/A 0.130±0.00 0.012±0.00 N/A N/A 0.194±0.00 N/A 0.046±0.00
ENSMUST00000159616 0.969±0.10 N/A 0.289±0.12 7.032±3.69 0.798±0.29 0.829±0.51 0.068±0.00 0.173±0.12 0.014±0.00 0.078±0.01 0.006±0.00 0.641±0.31 0.112±0.04 0.399±0.14
ENSMUST00000161677 0.269±0.00 0.413±0.18 0.158±0.00 3.143±0.13 N/A 0.562±0.00 0.049±0.03 0.267±0.07 0.045±0.03 N/A 0.023±0.02 0.162±0.04 0.027±0.01 0.059±0.00
ENSMUST00000161811 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 0.050±0.00 N/A N/A N/A 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0002 CGP 6:76881637-77979699

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002091 IGI negative regulation of receptor internalization
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0007626 IMP locomotory behavior
GO:0016021 ISS integral component of membrane
GO:0030054 IEA cell junction
GO:0030424 IEA axon
GO:0030426 IEA growth cone
GO:0035418 IMP protein localization to synapse
GO:0035640 IMP exploration behavior
GO:0045211 IEA postsynaptic membrane
GO:0050808 IMP synapse organization
GO:0060076 IEA excitatory synapse
GO:0060291 IGI long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052713 lrrtm1 leucine rich repeat transmembrane neuronal 1 protein_coding Danio_rerio
ENSG00000162951 LRRTM1 leucine rich repeat transmembrane neuronal 1 protein_coding Homo_sapiens

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