C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000066032-ENSG00000066032 CGP 9606 2:79185231-80648861
GeneTranscriptPositionBiotype
ENSG00000066032 (CTNNA2)
catenin (cadherin-associated protein), alpha 2 		ENST00000343114 (CTNNA2-004) 80313379-80648780 protein_coding
ENST00000361291 (CTNNA2-201) 80313379-80648861 protein_coding
ENST00000402739 (CTNNA2-003) 79651552-80648689 protein_coding
ENST00000409266 (CTNNA2-005) 79634541-79687729 protein_coding
ENST00000409550 (CTNNA2-015) 80328275-80555728 protein_coding
ENST00000409971 (CTNNA2-007) 79514622-79858066 protein_coding
ENST00000451966 (CTNNA2-006) 79513034-79744483 protein_coding
ENST00000465616 (CTNNA2-009) 80378687-80546054 processed_transcript
ENST00000466387 (CTNNA2-002) 79185231-80648779 protein_coding
ENST00000467488 (CTNNA2-012) 79292976-79319893 retained_intron
ENST00000467892 (CTNNA2-010) 80589339-80608489 retained_intron
ENST00000493024 (CTNNA2-014) 80305118-80545986 processed_transcript
ENST00000496251 (CTNNA2-011) 79281464-79340163 processed_transcript
ENST00000496558 (CTNNA2-001) 79513000-80648780 protein_coding
ENST00000497804 (CTNNA2-013) 79312710-79340171 processed_transcript
ENST00000508970 (CTNNA2-020) 79697846-79777101 processed_transcript
ENST00000540488 (CTNNA2-202) 80313379-80648861 protein_coding
ENST00000541047 (CTNNA2-203) 80305105-80648861 protein_coding
ENSG00000162951 (LRRTM1)
leucine rich repeat transmembrane neuronal 1 		ENST00000295057 (LRRTM1-002) 80301878-80304749 protein_coding
ENST00000409148 (LRRTM1-007) 80301880-80304274 protein_coding
ENST00000415098 (LRRTM1-003) 80303493-80304321 protein_coding
ENST00000416268 (LRRTM1-004) 80303151-80304595 protein_coding
ENST00000417012 (LRRTM1-001) 80288351-80304393 nonsense_mediated_decay
ENST00000433224 (LRRTM1-006) 80298181-80304730 nonsense_mediated_decay
ENST00000452811 (LRRTM1-005) 80303269-80304440 protein_coding
ENSG00000223427 (AC016716.1)
 ENST00000265882 (AC016716.1-001) 80162428-80163135 processed_pseudogene
ENSG00000224731 (AC016716.2)
 ENST00000418621 (AC016716.2-001) 80028012-80030551 antisense
ENSG00000229385 (AC010975.1)
 ENST00000443301 (AC010975.1-001) 79493716-79500844 antisense
ENSG00000230237 (AC010975.2)
 ENST00000427781 (AC010975.2-001) 79573764-79575593 processed_pseudogene
ENSG00000277171 (RP11-191H23.1)
 ENST00000618727 (RP11-191H23.1-001) 79547151-79548128 unprocessed_pseudogene
CIL_0003NY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063063-ENSMUSG00000063063 CGP 10090 6:76881637-77979699
GeneTranscriptPositionBiotype
ENSMUSG00000060780 (Lrrtm1)
leucine rich repeat transmembrane neuronal 1 		ENSMUST00000020400 (Lrrtm1-003) 77242689-77257791 nonsense_mediated_decay
ENSMUST00000159616 (Lrrtm1-001) 77242697-77245517 protein_coding
ENSMUST00000161677 (Lrrtm1-002) 77242718-77245511 protein_coding
ENSMUST00000161811 (Lrrtm1-004) 77242922-77244112 protein_coding
ENSMUSG00000063063 (Ctnna2)
catenin (cadherin associated protein), alpha 2 		ENSMUST00000075340 (Ctnna2-201) 76882550-77979560 protein_coding
ENSMUST00000159626 (Ctnna2-003) 76881640-77979550 protein_coding
ENSMUST00000160252 (Ctnna2-005) 77926505-77979585 processed_transcript
ENSMUST00000160894 (Ctnna2-002) 76881637-77979699 protein_coding
ENSMUST00000161846 (Ctnna2-001) 76881637-77979699 protein_coding
ENSMUST00000162273 (Ctnna2-004) 77598746-77979560 protein_coding
ENSMUST00000162991 (Ctnna2-006) 76882756-76902888 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NY_0001ENSG00000066032ENST00000343114ENST00000402739ENST00000466387ENST00000467892ENST00000496558ENST00000508970ENST00000540488ENST00000541047ENSG00000162951ENST00000295057ENST00000409148ENST00000415098ENST00000416268ENST00000417012ENST00000433224ENST00000452811ENSG00000223427ENST00000265882ENSG00000224731ENST00000418621ENSG00000229385ENST00000443301ENSG00000230237ENST00000427781ENSG00000277171ENST00000618727CIL_0003NY_0002ENSMUSG00000060780ENSMUST00000020400ENSMUST00000159616ENSMUST00000161677ENSMUST00000161811ENSMUSG00000063063ENSMUST00000075340ENSMUST00000159626ENSMUST00000160252ENSMUST00000160894ENSMUST00000161846ENSMUST00000162273ENSMUST00000162991
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066032 ENST00000343114 N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A 0.012±0.00 N/A N/A N/A 0.001±0.00 N/A
ENST00000361291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402739 N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.111±0.00 N/A N/A N/A N/A 1.871±0.30
ENST00000409266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466387 N/A N/A N/A N/A 0.037±0.00 N/A 0.012±0.00 0.033±0.00 N/A 0.021±0.00 N/A 0.044±0.00 N/A 1.440±0.00
ENST00000467488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.175±0.00 N/A N/A
ENST00000493024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496558 N/A N/A N/A 34.880±8.81 N/A 0.762±0.65 N/A N/A 0.069±0.00 N/A N/A 0.043±0.00 N/A 3.963±0.00
ENST00000497804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508970 N/A 0.088±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 N/A 0.016±0.01 N/A
ENST00000541047 N/A N/A 0.016±0.00 12.095±0.00 N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.080±0.04 0.004±0.00 N/A
ENSG00000162951 ENST00000295057 N/A N/A N/A 1.193±0.12 0.077±0.00 N/A 0.022±0.00 N/A N/A N/A N/A 0.158±0.09 N/A 0.287±0.01
ENST00000409148 N/A 0.145±0.00 0.237±0.00 1.495±0.00 0.338±0.00 0.568±0.00 0.062±0.04 0.173±0.00 0.038±0.01 0.166±0.00 0.081±0.00 0.490±0.00 N/A 0.186±0.00
ENST00000415098 N/A 0.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416268 N/A N/A N/A N/A 0.998±0.00 N/A N/A N/A 0.258±0.00 N/A N/A 0.188±0.00 N/A 0.534±0.00
ENST00000417012 N/A N/A N/A 2.795±0.00 N/A 0.111±0.00 N/A N/A N/A N/A N/A 0.170±0.00 N/A 0.129±0.00
ENST00000433224 N/A N/A N/A 0.803±0.00 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452811 0.176±0.00 N/A N/A 3.332±0.00 N/A 0.617±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223427 ENST00000265882 N/A N/A N/A 0.943±0.93 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224731 ENST00000418621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A
ENSG00000229385 ENST00000443301 N/A N/A N/A 0.126±0.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.383±1.19
ENSG00000230237 ENST00000427781 N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000277171 ENST00000618727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000060780 ENSMUST00000020400 N/A N/A N/A 2.817±0.00 N/A 0.205±0.00 N/A 0.130±0.00 0.012±0.00 N/A N/A 0.194±0.00 N/A 0.046±0.00
ENSMUST00000159616 0.969±0.10 N/A 0.289±0.12 7.032±3.69 0.798±0.29 0.829±0.51 0.068±0.00 0.173±0.12 0.014±0.00 0.078±0.01 0.006±0.00 0.641±0.31 0.112±0.04 0.399±0.14
ENSMUST00000161677 0.269±0.00 0.413±0.18 0.158±0.00 3.143±0.13 N/A 0.562±0.00 0.049±0.03 0.267±0.07 0.045±0.03 N/A 0.023±0.02 0.162±0.04 0.027±0.01 0.059±0.00
ENSMUST00000161811 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 0.050±0.00 N/A N/A N/A 0.045±0.00
ENSMUSG00000063063 ENSMUST00000075340 0.016±0.00 0.142±0.00 0.027±0.00 27.501±0.00 0.046±0.03 0.117±0.04 N/A 0.038±0.00 0.056±0.03 0.014±0.00 0.011±0.00 0.805±0.65 0.037±0.00 0.576±0.00
ENSMUST00000159626 N/A N/A 0.028±0.00 17.447±10.18 0.047±0.00 N/A 0.027±0.00 0.079±0.00 0.038±0.02 0.021±0.00 N/A 0.208±0.00 0.057±0.02 0.189±0.00
ENSMUST00000160252 0.133±0.00 0.582±0.00 N/A N/A N/A N/A 0.198±0.09 0.553±0.00 N/A N/A N/A 1.342±0.72 N/A N/A
ENSMUST00000160894 N/A N/A 0.034±0.00 20.090±0.20 0.038±0.00 0.180±0.06 0.041±0.00 0.076±0.00 0.032±0.00 N/A N/A 0.469±0.29 N/A 0.979±0.15
ENSMUST00000161846 0.018±0.00 0.189±0.11 N/A 14.302±3.01 N/A 0.221±0.07 0.026±0.00 0.055±0.01 0.032±0.01 N/A N/A 0.999±0.60 0.032±0.00 0.468±0.05
ENSMUST00000162273 N/A 0.155±0.00 N/A N/A 0.039±0.00 0.060±0.00 0.015±0.01 0.139±0.05 0.004±0.00 N/A 0.013±0.00 0.261±0.20 N/A N/A
ENSMUST00000162991 N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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