C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat transmembrane neuronal 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162951 LRRTM1 9606 - 2:80288351-80304749 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295057 LRRTM1-002 80301878-80304749 protein_coding
  ENST00000409148 LRRTM1-007 80301880-80304274 protein_coding
  ENST00000415098 LRRTM1-003 80303493-80304321 protein_coding
  ENST00000416268 LRRTM1-004 80303151-80304595 protein_coding
  ENST00000417012 LRRTM1-001 80288351-80304393 nonsense_mediated_decay
  ENST00000433224 LRRTM1-006 80298181-80304730 nonsense_mediated_decay
  ENST00000452811 LRRTM1-005 80303269-80304440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000295057ENST00000409148ENST00000415098ENST00000416268ENST00000417012ENST00000433224ENST00000452811
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000295057 N/A N/A N/A 1.193±0.12 0.077±0.00 N/A 0.022±0.00 N/A N/A N/A N/A 0.158±0.09 0.287±0.01
ENST00000409148 N/A 0.145±0.00 0.237±0.00 1.495±0.00 0.338±0.00 0.568±0.00 0.062±0.04 0.173±0.00 0.038±0.01 0.166±0.00 0.081±0.00 0.490±0.00 0.186±0.00
ENST00000415098 N/A 0.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416268 N/A N/A N/A N/A 0.998±0.00 N/A N/A N/A 0.258±0.00 N/A N/A 0.188±0.00 0.534±0.00
ENST00000417012 N/A N/A N/A 2.795±0.00 N/A 0.111±0.00 N/A N/A N/A N/A N/A 0.170±0.00 0.129±0.00
ENST00000433224 N/A N/A N/A 0.803±0.00 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452811 0.176±0.00 N/A N/A 3.332±0.00 N/A 0.617±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0001 CGP 2:79185231-80648861
CIL_0004I9 CIL_0004I9_0002 CGP 2:80288351-84460045

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002091 IEA negative regulation of receptor internalization
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007626 IEA locomotory behavior
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0035418 IEA protein localization to synapse
GO:0035640 IEA exploration behavior
GO:0045211 IEA postsynaptic membrane
GO:0050808 IEA synapse organization
GO:0060076 IEA excitatory synapse
GO:0060291 IEA long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052713 lrrtm1 leucine rich repeat transmembrane neuronal 1 protein_coding Danio_rerio
ENSMUSG00000060780 Lrrtm1 leucine rich repeat transmembrane neuronal 1 protein_coding Mus_musculus

Loading