C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat transmembrane neuronal 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159616 Lrrtm1-001 ENSMUSG00000060780 10090 + 6:77242697-77245517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159616
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159616 0.969±0.10 0.289±0.12 7.032±3.69 0.798±0.29 0.829±0.51 0.068±0.00 0.173±0.12 0.014±0.00 0.078±0.01 0.006±0.00 0.641±0.31 0.112±0.04 0.399±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0002 CGP 6:76881637-77979699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002091 IGI negative regulation of receptor internalization
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0007626 IMP locomotory behavior
GO:0016021 ISS integral component of membrane
GO:0030054 IEA cell junction
GO:0030424 IEA axon
GO:0030426 IEA growth cone
GO:0035418 IMP protein localization to synapse
GO:0035640 IMP exploration behavior
GO:0045211 IEA postsynaptic membrane
GO:0050808 IMP synapse organization
GO:0060076 IEA excitatory synapse
GO:0060291 IGI long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295057 LRRTM1-002 protein_coding Homo_sapiens 0 3145
ENST00000409148 LRRTM1-007 protein_coding Homo_sapiens 0 2876
ENST00000415098 LRRTM1-003 protein_coding Homo_sapiens 0 769
ENST00000416268 LRRTM1-004 protein_coding Homo_sapiens 0 1114
ENST00000417012 LRRTM1-001 nonsense_mediated_decay Homo_sapiens 0 2987
ENST00000433224 LRRTM1-006 nonsense_mediated_decay Homo_sapiens 0 3062
ENST00000452811 LRRTM1-005 protein_coding Homo_sapiens 0 939

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