C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: troponin T3, skeletal, fast
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061723 Tnnt3 10090 + 7:142498836-142516009 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074187 Tnnt3-201 142498836-142516008 protein_coding
  ENSMUST00000078497 Tnnt3-001 142498836-142516008 protein_coding
  ENSMUST00000105941 Tnnt3-013 142501638-142515830 protein_coding
  ENSMUST00000105942 Tnnt3-010 142501638-142515830 protein_coding
  ENSMUST00000105943 Tnnt3-012 142501638-142515830 protein_coding
  ENSMUST00000105944 Tnnt3-017 142501638-142515830 protein_coding
  ENSMUST00000105945 Tnnt3-016 142501638-142515830 protein_coding
  ENSMUST00000105946 Tnnt3-014 142501638-142515830 protein_coding
  ENSMUST00000105947 Tnnt3-011 142501638-142515830 protein_coding
  ENSMUST00000105948 Tnnt3-015 142501638-142515830 protein_coding
  ENSMUST00000105949 Tnnt3-009 142498872-142516004 protein_coding
  ENSMUST00000105950 Tnnt3-202 142498843-142516003 protein_coding
  ENSMUST00000105952 Tnnt3-007 142498836-142516008 protein_coding
  ENSMUST00000105953 Tnnt3-002 142498836-142516008 protein_coding
  ENSMUST00000105954 Tnnt3-005 142498836-142516008 protein_coding
  ENSMUST00000105955 Tnnt3-008 142498836-142516008 protein_coding
  ENSMUST00000105957 Tnnt3-203 142498843-142516003 protein_coding
  ENSMUST00000105958 Tnnt3-006 142498864-142516007 protein_coding
  ENSMUST00000125649 Tnnt3-003 142498836-142516008 processed_transcript
  ENSMUST00000128294 Tnnt3-020 142501617-142511536 protein_coding
  ENSMUST00000144259 Tnnt3-018 142514130-142516009 retained_intron
  ENSMUST00000146804 Tnnt3-021 142501620-142512622 protein_coding
  ENSMUST00000153262 Tnnt3-019 142504023-142512585 retained_intron
  ENSMUST00000169299 Tnnt3-204 142498843-142516003 protein_coding
  ENSMUST00000179658 Tnnt3-004 142498836-142516008 protein_coding
  ENSMUST00000180152 Tnnt3-205 142498843-142516003 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074187ENSMUST00000078497ENSMUST00000105942ENSMUST00000105943ENSMUST00000105944ENSMUST00000105945ENSMUST00000105946ENSMUST00000105949ENSMUST00000105950ENSMUST00000105952ENSMUST00000105953ENSMUST00000105954ENSMUST00000105955ENSMUST00000105958ENSMUST00000125649ENSMUST00000128294ENSMUST00000144259ENSMUST00000146804ENSMUST00000153262ENSMUST00000169299ENSMUST00000179658
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074187 1.930±0.00 N/A 13.705±2.76 0.177±0.02 251.756±62.93 N/A N/A 13.183±0.00 N/A N/A 8087.094±1348.92 1.295±0.00 N/A N/A
ENSMUST00000078497 N/A N/A N/A 0.267±0.00 N/A N/A N/A N/A 0.520±0.42 N/A N/A N/A 1.332±0.00 N/A
ENSMUST00000105942 0.451±0.29 N/A 8.379±0.00 0.207±0.05 247.763±0.00 N/A 0.059±0.02 N/A 0.129±0.04 N/A N/A 0.918±0.40 3.361±1.10 0.060±0.02
ENSMUST00000105943 N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A 0.090±0.00 N/A N/A 1.516±0.00 N/A 0.044±0.00
ENSMUST00000105944 N/A N/A N/A N/A N/A N/A N/A N/A 0.385±0.00 N/A N/A N/A N/A N/A
ENSMUST00000105945 N/A N/A 7.933±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.997±0.00 N/A
ENSMUST00000105946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.00 N/A N/A
ENSMUST00000105949 1.100±0.00 N/A N/A 0.333±0.00 0.155±0.00 0.186±0.00 0.371±0.00 N/A 0.090±0.04 N/A N/A 0.970±0.26 2.835±1.89 N/A
ENSMUST00000105950 N/A N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A N/A N/A 1.860±0.00 N/A N/A
ENSMUST00000105952 N/A N/A 4.322±0.33 N/A 74.732±0.00 N/A 0.391±0.00 15.527±1.72 N/A 22.313±0.50 N/A N/A N/A N/A
ENSMUST00000105953 N/A N/A N/A N/A N/A N/A N/A N/A 0.718±0.00 N/A N/A 1.138±0.00 1.428±0.67 N/A
ENSMUST00000105954 N/A N/A N/A N/A N/A N/A N/A N/A 0.903±1.01 N/A N/A N/A 2.007±0.00 N/A
ENSMUST00000105955 N/A N/A N/A N/A N/A N/A N/A 7.892±0.29 0.161±0.00 N/A N/A 0.803±0.38 N/A N/A
ENSMUST00000105958 N/A N/A N/A N/A N/A N/A N/A N/A 0.609±0.00 N/A N/A N/A N/A N/A
ENSMUST00000125649 N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A 0.400±0.00 1.883±0.56 N/A
ENSMUST00000128294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.317±2.19 N/A
ENSMUST00000144259 2.223±0.74 0.538±0.01 N/A N/A 0.825±0.43 0.694±0.37 0.281±0.26 0.091±0.00 0.081±0.00 1.646±0.21 N/A 1.401±0.41 N/A 0.095±0.00
ENSMUST00000146804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00
ENSMUST00000153262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.731±0.00 N/A
ENSMUST00000169299 N/A N/A 7.011±0.21 0.104±0.00 68.454±0.00 N/A N/A N/A 0.014±0.00 16.832±0.66 4543.717±896.49 N/A N/A N/A
ENSMUST00000179658 N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A N/A 0.165±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_0005NK CIL_0005NK_0003 CGP 7:142460809-142506771
CIL_0003FO CIL_0003FO_0003 CGP 7:142491074-142516009
CIL_00048I CIL_00048I_0002 CGP 7:142498836-142540747

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003009 IEA skeletal muscle contraction
GO:0003779 IEA actin binding
GO:0005523 IEA tropomyosin binding
GO:0005861 IEA troponin complex
GO:0006200 IEA ATP catabolic process
GO:0006937 IEA regulation of muscle contraction
GO:0006942 IEA regulation of striated muscle contraction
GO:0030172 IEA troponin C binding
GO:0030899 IEA calcium-dependent ATPase activity
GO:0031013 IEA troponin I binding
GO:0043462 IEA regulation of ATPase activity
GO:0048306 IEA calcium-dependent protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030270 tnnt3a troponin T3a, skeletal, fast protein_coding Danio_rerio
ENSDARG00000068457 tnnt3b troponin T3b, skeletal, fast protein_coding Danio_rerio
ENSG00000130595 TNNT3 troponin T type 3 (skeletal, fast) protein_coding Homo_sapiens

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