C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid induced 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102688 Rai1-005 ENSMUSG00000062115 10090 + 11:60175879-60199197 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102688
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102688 10.057±0.00 13.269±1.01 15.988±8.01 6.479±0.35 2.941±1.01 3.151±0.11 3.178±0.00 8.895±1.40 2.193±0.28 11.724±2.91 7.549±0.00 0.661±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_0000NM CIL_0000NM_0002 CGP 11:59970614-60199197
CIL_00003U CIL_00003U_0003 CGP 11:60105013-60222581

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0032922 IMP circadian regulation of gene expression
GO:0035326 ISS enhancer binding
GO:0040015 IMP negative regulation of multicellular organism growth
GO:0045893 ISS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353383 RAI1-001 protein_coding Homo_sapiens 0 4331
ENST00000395774 RAI1-002 protein_coding Homo_sapiens 0 2575
ENST00000471135 RAI1-006 protein_coding Homo_sapiens 0 254
ENST00000485080 SREBF1-016 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000583166 RAI1-008 protein_coding Homo_sapiens 0 228

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