C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cystin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062563 Cys1 10090 - 12:24665838-24681813 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074163 Cys1-001 24665838-24681813 nonsense_mediated_decay
  ENSMUST00000148477 Cys1-002 24666554-24679947 processed_transcript
  ENSMUST00000156453 Cys1-003 24666698-24680908 protein_coding
  ENSMUST00000163514 Cys1-005 24665953-24681023 nonsense_mediated_decay
  ENSMUST00000172771 Cys1-006 24668453-24680719 protein_coding
  ENSMUST00000173145 Cys1-004 24665953-24681023 nonsense_mediated_decay
  ENSMUST00000186602 Cys1-201 24665848-24681795 protein_coding
  ENSMUST00000189849 Cys1-202 24665848-24681795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074163ENSMUST00000148477ENSMUST00000156453ENSMUST00000163514ENSMUST00000172771ENSMUST00000173145ENSMUST00000186602ENSMUST00000189849
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074163 N/A 0.355±0.02 4.890±0.09 0.588±0.00 0.184±0.00 0.449±0.14 N/A 6.960±2.55 0.437±0.22 1.568±0.32 0.414±0.00 0.561±0.02 0.308±0.28 0.022±0.00
ENSMUST00000148477 0.744±0.00 N/A N/A 1.141±0.00 0.693±0.15 N/A 1.362±0.00 N/A 0.999±0.00 2.608±0.00 N/A 1.797±0.27 0.609±0.38 0.271±0.06
ENSMUST00000156453 0.577±0.00 1.272±0.23 N/A N/A 0.742±0.00 1.251±0.34 N/A N/A N/A 3.094±0.01 N/A 1.364±0.53 N/A N/A
ENSMUST00000163514 0.666±0.19 1.511±0.88 N/A 0.254±0.00 0.887±0.35 1.667±0.54 1.280±0.00 N/A N/A 2.599±0.26 N/A 1.570±0.51 N/A N/A
ENSMUST00000172771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.882±0.00 N/A N/A N/A
ENSMUST00000173145 0.841±0.00 N/A N/A N/A N/A 0.785±0.33 N/A N/A N/A N/A N/A 0.959±0.05 N/A N/A
ENSMUST00000186602 0.183±0.00 0.341±0.12 6.598±0.62 0.096±0.00 0.146±0.00 0.338±0.00 0.550±0.00 9.251±2.90 0.634±0.35 1.756±0.31 0.814±0.53 0.924±0.56 1.568±1.65 0.079±0.03
ENSMUST00000189849 0.230±0.00 0.199±0.06 N/A N/A 0.263±0.10 0.538±0.09 N/A 2.481±0.00 N/A 0.842±0.00 0.508±0.03 0.942±0.37 0.671±0.67 0.372±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DF CIL_0007DF_0002 CGP 12:24651371-24681813
CIL_0007DI CIL_0007DI_0002 CGP 12:24665838-24714146

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001822 IMP kidney development
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005930 IDA axoneme
GO:0036064 IDA ciliary basal body
GO:0045121 IDA membrane raft
GO:0048839 IMP inner ear development
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000205795 CYS1 cystin 1 protein_coding Homo_sapiens

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