C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myb-like, SWIRM and MPN domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062627 Mysm1 10090 - 4:94942040-94979100 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075872 Mysm1-001 94942040-94979100 protein_coding
  ENSMUST00000124820 Mysm1-003 94942063-94953388 processed_transcript
  ENSMUST00000125427 Mysm1-004 94947025-94953518 processed_transcript
  ENSMUST00000131575 Mysm1-006 94970279-94979053 processed_transcript
  ENSMUST00000132758 Mysm1-008 94965735-94979078 processed_transcript
  ENSMUST00000134730 Mysm1-007 94965603-94979042 processed_transcript
  ENSMUST00000136130 Mysm1-005 94972433-94979075 processed_transcript
  ENSMUST00000149954 Mysm1-002 94964376-94979075 processed_transcript
  ENSMUST00000155935 Mysm1-009 94965643-94970651 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075872ENSMUST00000124820ENSMUST00000125427ENSMUST00000155935
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075872 0.923±0.08 0.390±0.00 1.765±0.29 2.121±0.29 0.695±0.07 0.577±0.19 0.443±0.07 0.944±0.21 1.260±0.45 0.956±0.00 0.697±0.22 1.337±0.83 2.551±0.62 0.472±0.08
ENSMUST00000124820 2.571±0.62 1.981±0.53 4.259±0.93 4.959±0.92 2.793±0.48 1.911±0.51 0.517±0.21 1.212±0.21 1.294±0.69 3.542±0.27 0.390±0.11 2.992±1.08 1.642±0.05 0.707±0.24
ENSMUST00000125427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.939±0.00 N/A N/A
ENSMUST00000155935 N/A N/A N/A 13.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 12.157±1.36 6.903±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N6 CIL_0001N6_0002 CGP 4:94942040-95052222

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003713 ISS transcription coactivator activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005634 ISS nucleus
GO:0006338 ISS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006508 IEA proteolysis
GO:0008237 ISS metallopeptidase activity
GO:0032403 IEA protein complex binding
GO:0035522 ISS monoubiquitinated histone H2A deubiquitination
GO:0042393 ISS histone binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034693 mysm1 Myb-like, SWIRM and MPN domains 1 protein_coding Danio_rerio
ENSG00000162601 MYSM1 Myb-like, SWIRM and MPN domains 1 protein_coding Homo_sapiens

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