C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myb-like, SWIRM and MPN domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075872 Mysm1-001 ENSMUSG00000062627 10090 - 4:94942040-94979100 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075872
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075872 0.923±0.08 0.390±0.00 1.765±0.29 2.121±0.29 0.695±0.07 0.577±0.19 0.443±0.07 0.944±0.21 1.260±0.45 0.956±0.00 0.697±0.22 1.337±0.83 2.551±0.62 0.472±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N6 CIL_0001N6_0002 CGP 4:94942040-95052222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003713 ISS transcription coactivator activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005634 ISS nucleus
GO:0006338 ISS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006508 IEA proteolysis
GO:0008237 ISS metallopeptidase activity
GO:0032403 IEA protein complex binding
GO:0035522 ISS monoubiquitinated histone H2A deubiquitination
GO:0042393 ISS histone binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000401044 MYSM1-002 processed_transcript Homo_sapiens 0 1273
ENST00000472487 MYSM1-001 protein_coding Homo_sapiens 0 2514
ENST00000481973 MYSM1-007 processed_transcript Homo_sapiens 0 388
ENST00000493821 MYSM1-003 processed_transcript Homo_sapiens 0 2239
ENST00000622766 MYSM1-201 protein_coding Homo_sapiens 0 946

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