C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Myb-like, SWIRM and MPN domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162601 MYSM1 9606 - 1:58654739-58700092 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000401044 MYSM1-002 58659153-58690394 processed_transcript
  ENST00000466774 MYSM1-005 58682409-58700080 processed_transcript
  ENST00000472487 MYSM1-001 58654739-58700092 protein_coding
  ENST00000481973 MYSM1-007 58676772-58681896 processed_transcript
  ENST00000483003 MYSM1-006 58690188-58700072 processed_transcript
  ENST00000489282 MYSM1-004 58692406-58700077 processed_transcript
  ENST00000493821 MYSM1-003 58654740-58689662 processed_transcript
  ENST00000622766 MYSM1-201 58654751-58668483 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000401044ENST00000472487ENST00000493821ENST00000622766
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000401044 N/A N/A N/A 1.249±0.00 1.838±0.00 3.126±0.00 1.553±0.00 2.256±0.00 1.432±0.00 N/A N/A 2.797±0.00 N/A 1.174±0.00
ENST00000472487 1.182±0.00 1.179±0.00 0.447±0.00 1.026±0.10 0.897±0.02 1.265±0.69 0.585±0.07 0.649±0.09 0.663±0.49 1.457±0.89 0.902±0.00 0.944±0.30 0.533±0.26 1.073±0.17
ENST00000493821 N/A 0.657±0.00 0.532±0.00 0.632±0.06 N/A N/A 0.485±0.00 N/A N/A N/A N/A N/A N/A 0.453±0.00
ENST00000622766 0.382±0.00 1.175±0.00 N/A N/A 1.031±0.00 0.121±0.00 N/A 1.511±0.00 0.565±0.00 1.452±0.34 N/A 1.560±0.97 0.259±0.10 0.836±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N6 CIL_0001N6_0001 CGP 1:58654739-58784327

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006338 IMP chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006508 IEA proteolysis
GO:0008237 IMP metallopeptidase activity
GO:0032403 IDA protein complex binding
GO:0035522 IMP monoubiquitinated histone H2A deubiquitination
GO:0042393 IDA histone binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034693 mysm1 Myb-like, SWIRM and MPN domains 1 protein_coding Danio_rerio
ENSMUSG00000062627 Mysm1 myb-like, SWIRM and MPN domains 1 protein_coding Mus_musculus

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