C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphoseryl-tRNA kinase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000063179 Pstk 10090 + 7:131371141-131387839 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075610 Pstk-001 131371141-131387839 protein_coding
  ENSMUST00000124672 Pstk-003 131373035-131387833 retained_intron
  ENSMUST00000128092 Pstk-007 131383925-131387836 processed_transcript
  ENSMUST00000133284 Pstk-006 131384498-131387832 processed_transcript
  ENSMUST00000141914 Pstk-004 131371157-131374263 processed_transcript
  ENSMUST00000145114 Pstk-002 131371146-131387836 nonsense_mediated_decay
  ENSMUST00000148533 Pstk-005 131384257-131387727 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075610ENSMUST00000124672ENSMUST00000141914ENSMUST00000145114
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075610 5.784±0.42 N/A 9.915±2.21 3.490±0.33 4.849±1.70 6.419±2.80 4.563±1.40 7.545±1.53 5.141±1.42 2.894±0.59 11.470±0.85 9.098±3.11 3.271±2.51 1.593±0.42
ENSMUST00000124672 N/A N/A 2.393±0.00 1.489±0.26 N/A N/A N/A N/A 0.755±0.03 N/A 0.933±0.00 3.026±0.22 0.645±0.16 0.489±0.00
ENSMUST00000141914 15.775±1.69 40.367±9.63 9.781±0.00 8.088±1.20 17.854±1.22 17.326±3.79 21.234±1.11 9.437±2.21 7.972±1.87 9.211±0.96 14.389±2.06 21.755±8.56 8.120±2.34 2.672±0.71
ENSMUST00000145114 N/A 6.913±2.54 N/A N/A 4.163±2.25 5.524±2.83 N/A 1.339±0.00 3.115±0.45 2.100±0.00 N/A 7.668±3.02 N/A 1.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0008DB CIL_0008DB_0002 VISTA 7:131163946-131765852
CIL_0009A3 CIL_0009A3_0002 VISTA 7:131196657-131797909
CIL_0007QE CIL_0007QE_0002 VISTA 7:131249727-131851322
CIL_0002JF CIL_0002JF_0002 CGP 7:131342718-131387839
CIL_00011P CIL_00011P_0002 CGP 7:131371141-131410521

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0001514 IDA selenocysteine incorporation
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0016301 IDA kinase activity
GO:0016310 IEA phosphorylation
GO:0097056 IEA selenocysteinyl-tRNA(Sec) biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000179988 PSTK phosphoseryl-tRNA kinase protein_coding Homo_sapiens

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