C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoseryl-tRNA kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145114 Pstk-002 ENSMUSG00000063179 10090 + 7:131371146-131387836 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryTestisENSMUST00000145114
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000145114 6.913±2.54 4.163±2.25 5.524±2.83 1.339±0.00 3.115±0.45 2.100±0.00 7.668±3.02 1.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0008DB CIL_0008DB_0002 VISTA 7:131163946-131765852
CIL_0009A3 CIL_0009A3_0002 VISTA 7:131196657-131797909
CIL_0007QE CIL_0007QE_0002 VISTA 7:131249727-131851322
CIL_0002JF CIL_0002JF_0002 CGP 7:131342718-131387839
CIL_00011P CIL_00011P_0002 CGP 7:131371141-131410521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0001514 IDA selenocysteine incorporation
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0016301 IDA kinase activity
GO:0016310 IEA phosphorylation
GO:0097056 IEA selenocysteinyl-tRNA(Sec) biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368887 PSTK-001 protein_coding Homo_sapiens 0 664
ENST00000405485 PSTK-201 protein_coding Homo_sapiens 0 664
ENST00000406217 PSTK-002 protein_coding Homo_sapiens 0 896
ENST00000465232 PSTK-006 processed_transcript Homo_sapiens 0 363
ENST00000483455 PSTK-005 processed_transcript Homo_sapiens 0 499
ENST00000483755 PSTK-008 processed_transcript Homo_sapiens 0 427
ENST00000493461 PSTK-003 retained_intron Homo_sapiens 0 518
ENST00000496079 PSTK-007 processed_transcript Homo_sapiens 0 538
ENST00000497219 PSTK-004 processed_transcript Homo_sapiens 0 640

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