C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: KRR1, small subunit (SSU) processome component, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163048 Krr1-001 ENSMUSG00000063334 10090 + 10:111972664-111988432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163048
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163048 0.939±0.48 0.588±0.18 2.275±0.06 1.053±0.11 1.855±0.35 1.450±0.52 0.525±0.05 0.983±0.35 1.241±0.38 1.804±0.60 0.965±0.10 0.940±0.56 1.540±0.17 0.577±0.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045171 IEA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229214 KRR1-001 protein_coding Homo_sapiens 0 1223
ENST00000266659 GLIPR1-001 protein_coding Homo_sapiens 6e-37 161
ENST00000419430 KRR1P1-001 processed_pseudogene Homo_sapiens 0 209
ENST00000438169 KRR1-003 protein_coding Homo_sapiens 0 667
ENST00000550023 KRR1-002 retained_intron Homo_sapiens 0 512
ENST00000550898 KRR1-004 retained_intron Homo_sapiens 0 370
ENST00000551070 KRR1-005 retained_intron Homo_sapiens 0 534
ENST00000612627 KRR1-201 protein_coding Homo_sapiens 0 1182

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