C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700112E06 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000063458 1700112E06Rik 10090 + 14:22019712-23056085 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075639 1700112E06Rik-001 22019712-23056085 protein_coding
  ENSMUST00000159107 1700112E06Rik-005 22310165-22584439 processed_transcript
  ENSMUST00000159777 1700112E06Rik-003 22019848-22716410 protein_coding
  ENSMUST00000161249 1700112E06Rik-004 22019821-22828775 protein_coding
  ENSMUST00000162337 1700112E06Rik-006 22577727-22599268 processed_transcript
  ENSMUST00000162540 1700112E06Rik-002 22019848-23056085 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075639ENSMUST00000159107ENSMUST00000159777ENSMUST00000161249ENSMUST00000162337ENSMUST00000162540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075639 2.522±1.06 0.569±0.21 0.685±0.37 0.016±0.00 1.276±0.50 0.094±0.03 0.220±0.00 0.991±0.21 0.141±0.03 0.540±0.27 0.975±0.23 1.482±0.81 0.191±0.16 0.740±0.40
ENSMUST00000159107 N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A 0.233±0.00 N/A N/A N/A N/A N/A
ENSMUST00000159777 0.762±0.06 N/A N/A N/A N/A N/A N/A N/A 0.369±0.06 N/A N/A 0.421±0.18 N/A 0.907±0.00
ENSMUST00000161249 N/A 1.106±0.19 1.096±0.00 0.261±0.00 1.465±0.24 0.544±0.36 0.175±0.05 1.400±0.06 0.574±0.34 N/A N/A 1.851±0.78 0.238±0.10 N/A
ENSMUST00000162337 N/A 0.124±0.00 N/A 0.057±0.02 0.400±0.05 0.202±0.09 0.048±0.02 0.257±0.08 0.079±0.04 0.155±0.08 0.472±0.10 0.353±0.19 0.025±0.02 0.173±0.07
ENSMUST00000162540 2.530±0.83 N/A N/A 0.107±0.10 0.545±0.00 N/A 0.070±0.05 0.540±0.16 0.554±0.00 N/A N/A 1.090±0.65 0.188±0.14 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0002 UCNEbase 14:21252402-23394598
CIL_0008UO CIL_0008UO_0002 VISTA 14:21553194-22153685
CIL_000925 CIL_000925_0002 VISTA 14:21565849-22167377
CIL_00084B CIL_00084B_0002 VISTA 14:21666827-22268239
CIL_0008K8 CIL_0008K8_0002 VISTA 14:21690858-22291990
CIL_0008KK CIL_0008KK_0002 VISTA 14:21813215-22415951
CIL_0001IM CIL_0001IM_0002 CGP 14:21983962-23056085
CIL_0005E6 CIL_0005E6_0002 CGP 14:22019712-24004859

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0030318 ISS melanocyte differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057166 C13H10orf11 chromosome 10 open reading frame 11 protein_coding Danio_rerio
ENSG00000148655 C10orf11 chromosome 10 open reading frame 11 protein_coding Homo_sapiens

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