C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphodiesterase 6H, cGMP-specific, cone, gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000064330 Pde6h 10090 + 6:136954523-136968865 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057650 Pde6h-002 136954533-136963483 retained_intron
  ENSMUST00000137768 Pde6h-001 136954523-136968865 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057650ENSMUST00000137768
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057650 0.005±0.00 0.038±0.00 0.007±0.00 0.021±0.01 0.043±0.02 0.011±0.00 0.035±0.01 0.030±0.02 0.018±0.01 0.015±0.00 0.063±0.02 0.015±0.01 0.082±0.05
ENSMUST00000137768 0.010±0.00 0.033±0.00 0.004±0.00 0.010±0.00 0.046±0.04 0.014±0.00 0.034±0.01 0.013±0.02 0.020±0.01 N/A 0.054±0.02 0.013±0.01 0.049±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000373 CIL_000373_0002 CGP 6:136923523-136968865
CIL_000374 CIL_000374_0002 CGP 6:136954523-137170497

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000187 IDA activation of MAPK activity
GO:0007601 IEA visual perception
GO:0008152 IEA metabolic process
GO:0030553 IEA cGMP binding
GO:0045742 IDA positive regulation of epidermal growth factor receptor signaling pathway
GO:0045745 IDA positive regulation of G-protein coupled receptor protein signaling pathway
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056791 PDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma protein_coding Danio_rerio
ENSG00000139053 PDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma protein_coding Homo_sapiens

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