Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_000374_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000139053-ENSG00000134533	CGP	9606	12:14973022-15348675
Gene	Transcript	Position	Biotype
ENSG00000134533 (RERG) RAS-like, estrogen-regulated, growth inhibitor	ENST00000256953 (RERG-001)	15107783-15221417	protein_coding
	ENST00000393736 (RERG-007)	15121065-15348598	protein_coding
	ENST00000437578 (RERG-008)	15346477-15348675	processed_transcript
	ENST00000536465 (RERG-005)	15107817-15218051	protein_coding
	ENST00000537647 (RERG-010)	15110927-15221406	protein_coding
	ENST00000537717 (RERG-006)	15217096-15221268	retained_intron
	ENST00000538313 (RERG-002)	15107790-15217629	protein_coding
	ENST00000545567 (RERG-009)	15109409-15138163	protein_coding
	ENST00000546331 (RERG-004)	15108607-15221417	protein_coding
ENSG00000139053 (PDE6H) phosphodiesterase 6H, cGMP-specific, cone, gamma	ENST00000266395 (PDE6H-001)	14973022-14981865	protein_coding
ENSG00000151490 (PTPRO) protein tyrosine phosphatase, receptor type, O	ENST00000281171 (PTPRO-001)	15322397-15597393	protein_coding
	ENST00000348962 (PTPRO-002)	15322553-15597393	protein_coding
	ENST00000442921 (PTPRO-004)	15546352-15597399	protein_coding
	ENST00000445537 (PTPRO-006)	15546352-15597399	protein_coding
	ENST00000535311 (PTPRO-011)	15546618-15580069	nonsense_mediated_decay
	ENST00000535322 (PTPRO-012)	15580763-15587176	protein_coding
	ENST00000538907 (PTPRO-009)	15565349-15580746	retained_intron
	ENST00000542557 (PTPRO-005)	15546352-15597399	protein_coding
	ENST00000543886 (PTPRO-003)	15322543-15517063	protein_coding
	ENST00000544244 (PTPRO-007)	15546352-15597399	protein_coding
	ENST00000544706 (PTPRO-010)	15595221-15596574	processed_transcript
	ENST00000545023 (PTPRO-008)	15322777-15410766	processed_transcript
ENSG00000255660 (RERG-AS1) RERG antisense RNA 1	ENST00000541243 (RERG-AS1-001)	15151923-15155283	lincRNA
ENSG00000255727 (LINC01489) long intergenic non-protein coding RNA 1489	ENST00000542689 (LINC01489-001)	15001833-15006683	lincRNA
ENSG00000256283 (METTL8P1) methyltransferase like 8 pseudogene 1	ENST00000428182 (METTL8P1-001)	15255213-15255823	processed_pseudogene
ENSG00000256650 (RERG-IT1) RERG intronic transcript 1 (non-protein coding)	ENST00000539734 (RERG-IT1-001)	15112363-15114698	sense_intronic

CIL_000374_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000064330-ENSMUSG00000030222	CGP	10090	6:136954523-137170497
Gene	Transcript	Position	Biotype
ENSMUSG00000030222 (Rerg) RAS-like, estrogen-regulated, growth-inhibitor	ENSMUST00000032347 (Rerg-002)	137054825-137170497	protein_coding
	ENSMUST00000117919 (Rerg-001)	137054831-137169732	protein_coding
	ENSMUST00000119610 (Rerg-004)	137056099-137169685	protein_coding
	ENSMUST00000149100 (Rerg-003)	137120660-137169708	processed_transcript
ENSMUSG00000064330 (Pde6h) phosphodiesterase 6H, cGMP-specific, cone, gamma	ENSMUST00000057650 (Pde6h-002)	136954533-136963483	retained_intron
	ENSMUST00000137768 (Pde6h-001)	136954523-136968865	protein_coding

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000134533

ENST00000256953

4.580±0.00

12.086±0.00

3.202±0.00

3.123±0.08

5.670±2.71

9.050±6.46

0.863±0.55

8.971±8.82

6.046±0.00

5.008±0.02

1.038±0.00

6.014±4.92

7.420±2.60

9.465±8.33

N/A

N/A

N/A

N/A

3.482±0.00

2.699±0.00

N/A

ENST00000537717

N/A

47.325±0.00

15.164±0.00

13.463±0.00

8.405±0.00

2.300±0.00

2.851±0.00

28.779±0.00

23.651±0.00

3.388±0.00

N/A

ENST00000538313

N/A

0.390±0.00

N/A

ENST00000545567

N/A

ENST00000546331

1.789±0.00

N/A

2.676±0.00

N/A

0.774±0.00

0.613±0.00

2.700±0.00

1.413±0.00

0.360±0.00

0.314±0.00

N/A

1.070±0.00

ENSG00000139053

ENST00000266395

N/A

0.505±0.00

0.081±0.00

N/A

0.559±0.42

0.046±0.00

ENSG00000151490

ENST00000281171

N/A

2.164±1.09

N/A

1.161±0.00

N/A

ENST00000348962

N/A

2.989±0.00

1.101±0.00

N/A

0.141±0.00

N/A

5.641±0.00

N/A

ENST00000442921

N/A

0.294±0.00

N/A

1.218±0.00

N/A

0.520±0.14

0.253±0.00

0.320±0.00

ENST00000445537

N/A

0.333±0.00

0.726±0.00

N/A

0.772±0.65

0.145±0.00

N/A

ENST00000535311

N/A

0.756±0.00

N/A

ENST00000535322

N/A

0.250±0.00

N/A

ENST00000538907

N/A

1.811±0.00

N/A

ENST00000542557

0.405±0.00

N/A

0.355±0.03

0.376±0.00

N/A

0.161±0.01

0.907±0.00

0.082±0.00

0.679±0.56

1.072±0.36

0.262±0.00

ENST00000543886

N/A

0.139±0.00

N/A

0.058±0.00

N/A

ENST00000544244

0.161±0.00

N/A

0.652±0.00

N/A

0.149±0.00

N/A

0.808±0.53

N/A

0.667±0.00

0.199±0.05

N/A

ENST00000544706

N/A

0.862±0.00

0.167±0.00

N/A

0.256±0.00

0.561±0.00

N/A

ENST00000545023

N/A

ENSG00000255660

ENST00000541243

N/A

0.264±0.00

0.210±0.00

0.201±0.00

N/A

0.363±0.00

0.131±0.01

ENSG00000255727

ENST00000542689

N/A

0.236±0.00

N/A

0.196±0.00

0.190±0.00

0.791±0.00

0.429±0.00

0.094±0.00

0.144±0.00

0.087±0.00

N/A

0.122±0.06

0.078±0.00

0.274±0.00

ENSG00000256283

ENST00000428182

N/A

0.056±0.00

N/A

ENSG00000256650

ENST00000539734

N/A

0.085±0.00

N/A

1.974±1.32

0.117±0.00

0.040±0.00

0.125±0.00

N/A

0.292±0.00

N/A

0.147±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000030222

ENSMUST00000032347

N/A

1.102±0.00

N/A

0.461±0.06

8.723±4.94

0.619±0.48

1.136±0.29

ENSMUST00000117919

1.574±1.31

23.513±2.70

16.787±2.70

1.913±0.60

1.016±0.47

3.286±0.41

0.929±0.13

3.537±0.31

1.297±1.08

7.287±0.49

0.348±0.12

13.317±4.06

0.943±1.05

2.290±0.13

ENSMUST00000119610

N/A

4.000±0.00

N/A

0.343±0.00

N/A

0.506±0.00

N/A

0.441±0.06

19.298±0.00

1.252±0.76

2.617±0.00

ENSMUST00000149100

1.687±1.12

126.833±12.26

N/A

1.651±0.78

4.425±2.24

N/A

2.387±0.36

0.814±0.34

5.799±1.56

N/A

18.106±3.75

N/A

ENSMUSG00000064330

ENSMUST00000057650

0.005±0.00

N/A

0.038±0.00

0.007±0.00

0.021±0.01

0.043±0.02

0.011±0.00

0.035±0.01

0.030±0.02

0.018±0.01

0.015±0.00

0.063±0.02

0.015±0.01

0.082±0.05

ENSMUST00000137768

0.010±0.00

N/A

0.033±0.00

0.004±0.00

0.010±0.00

0.046±0.04

0.014±0.00

0.034±0.01

0.013±0.02

0.020±0.01

N/A

0.054±0.02

0.013±0.01

0.049±0.04

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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