C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein R
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066037 Hnrnpr 10090 + 4:136310942-136345981 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084219 Hnrnpr-007 136311025-136340863 protein_coding
  ENSMUST00000105850 Hnrnpr-002 136310968-136340681 protein_coding
  ENSMUST00000125696 Hnrnpr-005 136311535-136327257 protein_coding
  ENSMUST00000131671 Hnrnpr-003 136310942-136340681 protein_coding
  ENSMUST00000134524 Hnrnpr-006 136311591-136329501 protein_coding
  ENSMUST00000145282 Hnrnpr-008 136311028-136329473 nonsense_mediated_decay
  ENSMUST00000148843 Hnrnpr-001 136310968-136345981 protein_coding
  ENSMUST00000153505 Hnrnpr-009 136336073-136339273 retained_intron
  ENSMUST00000156259 Hnrnpr-004 136311685-136316423 protein_coding
  ENSMUST00000182327 Hnrnpr-010 136339019-136342966 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084219ENSMUST00000105850ENSMUST00000131671ENSMUST00000148843ENSMUST00000153505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084219 N/A N/A N/A N/A N/A N/A N/A 1.061±0.00 4.028±1.19 N/A 0.918±0.00 8.272±3.00 9.206±2.09 N/A
ENSMUST00000105850 4.178±1.62 1.053±0.00 8.167±0.67 24.293±1.59 2.253±0.61 1.729±0.87 3.241±0.32 3.007±0.44 8.206±7.39 4.524±0.48 2.788±0.56 5.825±2.98 9.011±2.99 4.797±1.34
ENSMUST00000131671 5.012±2.01 3.613±0.72 12.274±0.48 20.500±7.03 3.391±1.92 2.961±0.81 3.871±0.69 4.027±1.48 10.641±9.50 6.948±1.86 4.449±0.52 7.238±5.80 17.353±3.71 5.661±2.45
ENSMUST00000148843 0.672±0.39 N/A 1.306±0.04 2.620±1.32 0.435±0.03 N/A 0.224±0.00 0.465±0.07 0.356±0.07 1.366±0.17 0.293±0.00 1.320±0.20 N/A N/A
ENSMUST00000153505 N/A N/A N/A 38.013±0.00 N/A N/A N/A N/A N/A N/A N/A 84.527±0.00 62.147±21.74 153.844±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014569 hnrnpr heterogeneous nuclear ribonucleoprotein R protein_coding Danio_rerio
ENSG00000125944 HNRNPR heterogeneous nuclear ribonucleoprotein R protein_coding Homo_sapiens

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