C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein R
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148843 Hnrnpr-001 ENSMUSG00000066037 10090 + 4:136310968-136345981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryENSMUST00000148843
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000148843 0.672±0.39 1.306±0.04 2.620±1.32 0.435±0.03 0.224±0.00 0.465±0.07 0.356±0.07 1.366±0.17 0.293±0.00 1.320±0.20

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000027864 hnrnpr-201 protein_coding Danio_rerio 0 233
ENST00000302271 HNRNPR-001 protein_coding Homo_sapiens 0 3869
ENST00000374612 HNRNPR-003 protein_coding Homo_sapiens 0 3976
ENST00000374616 HNRNPR-002 protein_coding Homo_sapiens 0 3912
ENST00000427764 HNRNPR-201 protein_coding Homo_sapiens 0 2134
ENST00000453465 HNRNPRP1-001 processed_pseudogene Homo_sapiens 0 1884
ENST00000463552 HNRNPR-010 processed_transcript Homo_sapiens 0 935
ENST00000464516 HNRNPR-006 processed_transcript Homo_sapiens 0 305
ENST00000470941 HNRNPR-009 processed_transcript Homo_sapiens 0 688
ENST00000476451 HNRNPR-008 processed_transcript Homo_sapiens 0 1035
ENST00000476660 HNRNPR-005 processed_transcript Homo_sapiens 0 2126
ENST00000478691 HNRNPR-004 protein_coding Homo_sapiens 0 3877
ENST00000490652 HNRNPR-007 processed_transcript Homo_sapiens 0 604
ENST00000606561 HNRNPR-011 protein_coding Homo_sapiens 0 2289

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