C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein R
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125944 HNRNPR 9606 - 1:23303771-23344336 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302271 HNRNPR-001 23309788-23344262 protein_coding
  ENST00000374612 HNRNPR-003 23309786-23344322 protein_coding
  ENST00000374616 HNRNPR-002 23309783-23344310 protein_coding
  ENST00000427764 HNRNPR-201 23310454-23341008 protein_coding
  ENST00000463552 HNRNPR-010 23313553-23338549 processed_transcript
  ENST00000464516 HNRNPR-006 23303771-23306632 processed_transcript
  ENST00000470941 HNRNPR-009 23313599-23333631 processed_transcript
  ENST00000476451 HNRNPR-008 23318483-23338135 processed_transcript
  ENST00000476660 HNRNPR-005 23309784-23311893 processed_transcript
  ENST00000478691 HNRNPR-004 23304688-23344336 protein_coding
  ENST00000490652 HNRNPR-007 23338270-23344317 processed_transcript
  ENST00000606561 HNRNPR-011 23310333-23344295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302271ENST00000374612ENST00000374616ENST00000476451ENST00000476660ENST00000478691ENST00000606561
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302271 N/A 7.046±0.00 N/A 8.448±5.29 N/A 7.029±0.00 8.834±0.00 16.912±0.00 3.903±0.00 10.632±4.23 6.977±0.00 24.966±4.68 19.016±4.30 7.853±0.54
ENST00000374612 15.363±0.00 15.813±0.00 5.450±0.00 7.222±4.18 7.129±1.23 9.884±3.37 3.626±2.08 6.190±0.89 6.092±1.25 7.968±0.00 1.064±0.00 10.992±0.00 9.788±2.77 14.089±7.45
ENST00000374616 N/A N/A N/A 1.419±0.00 5.777±0.97 5.197±0.00 1.278±0.00 N/A 6.086±0.00 N/A 1.684±0.56 13.830±5.26 10.623±4.48 14.338±0.00
ENST00000476451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.226±0.00 32.253±0.00 16.270±0.00
ENST00000476660 N/A 10.321±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.492±0.00 18.156±0.00 N/A
ENST00000478691 N/A 1.916±0.00 N/A N/A N/A 1.676±0.00 0.832±0.15 1.329±0.00 N/A 2.518±0.00 0.446±0.00 2.431±0.14 N/A 2.140±0.00
ENST00000606561 17.529±0.00 18.580±0.00 N/A 24.222±0.00 8.528±0.00 10.144±0.00 N/A N/A N/A 10.120±0.00 5.276±4.47 19.823±0.00 N/A 10.494±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 NAS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 NAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0019013 IEA viral nucleocapsid
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014569 hnrnpr heterogeneous nuclear ribonucleoprotein R protein_coding Danio_rerio
ENSMUSG00000066037 Hnrnpr heterogeneous nuclear ribonucleoprotein R protein_coding Mus_musculus

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