C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP4 pre-mRNA processing factor 4 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066148 Prpf4 10090 + 4:62408797-62426990 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084524 Prpf4-001 62408797-62426990 protein_coding
  ENSMUST00000148774 Prpf4-002 62421844-62423331 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084524ENSMUST00000148774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084524 5.281±1.87 6.857±2.14 3.708±0.02 4.877±2.49 4.215±0.47 3.363±1.15 3.160±0.43 5.231±0.38 4.973±2.40 4.076±1.08 4.689±0.26 6.364±1.67 4.076±1.85 4.238±1.43
ENSMUST00000148774 N/A 6.130±1.05 N/A N/A 4.898±0.83 3.780±0.00 N/A N/A N/A N/A N/A 6.975±1.51 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CB CIL_0002CB_0003 CGP 4:62383654-62426990
CIL_0004CQ CIL_0004CQ_0002 CGP 4:62408797-62435252

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0015030 IEA Cajal body
GO:0071001 IEA U4/U6 snRNP

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067639 prpf4 PRP4 pre-mRNA processing factor 4 homolog (yeast) protein_coding Danio_rerio
ENSDARG00000076717 prpf4 PRP4 pre-mRNA processing factor 4 homolog (yeast) protein_coding Danio_rerio
ENSG00000136875 PRPF4 pre-mRNA processing factor 4 protein_coding Homo_sapiens

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