C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004CQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136875-ENSG00000165188 CGP 9606 9:113275343-113303376
GeneTranscriptPositionBiotype
ENSG00000136875 (PRPF4)
pre-mRNA processing factor 4 		ENST00000374198 (PRPF4-002) 113275642-113292776 protein_coding
ENST00000374199 (PRPF4-001) 113275343-113292905 protein_coding
ENST00000488937 (PRPF4-003) 113279096-113283176 processed_transcript
ENSG00000165188 (RNF183)
ring finger protein 183 		ENST00000297894 (RNF183-001) 113297454-113303271 protein_coding
ENST00000416588 (RNF183-004) 113297443-113298865 protein_coding
ENST00000441031 (RNF183-002) 113297093-113299196 protein_coding
ENST00000443976 (RNF183-003) 113302101-113303376 processed_transcript
ENST00000478493 (RNF183-007) 113299647-113303115 processed_transcript
ENST00000478815 (RNF183-005) 113297454-113299765 protein_coding
ENST00000489339 (RNF183-006) 113299648-113303274 processed_transcript
ENSG00000176386 (CDC26)
cell division cycle 26 		ENST00000374206 (CDC26-002) 113267008-113275589 protein_coding
ENST00000490408 (CDC26-001) 113255835-113275549 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0004CQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066148-ENSMUSG00000063851 CGP 10090 4:62408797-62435252
GeneTranscriptPositionBiotype
ENSMUSG00000063851 (Rnf183)
ring finger protein 183 		ENSMUST00000079420 (Rnf183-201) 62427987-62428559 protein_coding
ENSMUST00000107454 (Rnf183-002) 62427542-62434726 protein_coding
ENSMUST00000107455 (Rnf183-001) 62427540-62435252 protein_coding
ENSMUSG00000066148 (Prpf4)
PRP4 pre-mRNA processing factor 4 homolog (yeast) 		ENSMUST00000084524 (Prpf4-001) 62408797-62426990 protein_coding
ENSMUST00000148774 (Prpf4-002) 62421844-62423331 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CQ_0001ENSG00000136875ENST00000374198ENST00000374199ENST00000488937ENSG00000165188ENST00000297894ENST00000416588ENST00000441031ENST00000443976ENST00000478493ENST00000478815ENST00000489339ENSG00000176386ENST00000374206ENST00000490408CIL_0004CQ_0002ENSMUSG00000063851ENSMUST00000079420ENSMUST00000107454ENSMUST00000107455ENSMUSG00000066148ENSMUST00000084524ENSMUST00000148774
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CQ_0001ENSG00000136875ENST00000374198ENST00000374199ENSG00000165188ENST00000297894ENST00000416588ENST00000441031ENST00000443976ENST00000478493ENST00000478815ENST00000489339ENSG00000176386ENST00000374206CIL_0004CQ_0002ENSMUSG00000063851ENSMUST00000079420ENSMUST00000107454ENSMUST00000107455ENSMUSG00000066148ENSMUST00000084524ENSMUST00000148774
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136875 ENST00000374198 3.990±0.00 5.856±0.00 0.861±0.00 4.526±0.00 1.960±0.00 1.030±0.00 1.896±0.00 2.009±0.71 1.868±0.10 2.531±0.00 2.388±0.00 7.938±3.87 4.472±0.42 6.431±0.00
ENST00000374199 4.436±0.00 3.449±0.00 1.378±0.00 3.202±0.71 3.753±0.27 3.504±2.46 1.754±0.47 3.314±1.91 2.411±0.57 4.989±0.00 2.589±1.17 5.654±2.44 5.727±2.38 4.852±0.29
ENST00000488937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165188 ENST00000297894 N/A N/A 0.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.01 N/A N/A
ENST00000416588 N/A N/A N/A N/A N/A 0.052±0.00 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000441031 0.014±0.00 N/A N/A 0.161±0.00 0.152±0.08 N/A N/A 1.526±0.00 N/A 0.138±0.00 N/A 0.462±0.41 N/A 1.023±0.00
ENST00000443976 N/A N/A 0.376±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478493 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A
ENST00000478815 N/A N/A N/A N/A 0.057±0.01 N/A 0.035±0.00 N/A N/A N/A N/A 0.042±0.01 N/A N/A
ENST00000489339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.00 0.050±0.00 0.732±0.00
ENSG00000176386 ENST00000374206 17.362±0.00 10.822±0.00 4.579±0.00 8.920±1.83 11.472±0.69 14.839±8.32 7.753±1.16 10.997±0.83 9.251±6.12 10.998±2.53 5.154±0.64 24.242±18.14 16.825±6.57 14.141±0.87
ENST00000490408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000063851 ENSMUST00000079420 0.330±0.25 0.555±0.25 0.050±0.00 0.199±0.07 0.120±0.07 0.957±0.33 N/A 39.818±15.40 0.072±0.04 0.276±0.05 0.126±0.05 1.107±0.74 0.234±0.00 0.830±0.33
ENSMUST00000107454 0.381±0.20 0.147±0.09 0.027±0.02 0.139±0.00 0.046±0.01 0.323±0.04 N/A 16.699±4.82 0.027±0.01 0.136±0.10 N/A 0.389±0.26 0.158±0.09 0.709±0.00
ENSMUST00000107455 N/A N/A N/A 0.249±0.00 N/A N/A N/A 7.307±2.36 N/A N/A N/A N/A N/A 0.462±0.13
ENSMUSG00000066148 ENSMUST00000084524 5.281±1.87 6.857±2.14 3.708±0.02 4.877±2.49 4.215±0.47 3.363±1.15 3.160±0.43 5.231±0.38 4.973±2.40 4.076±1.08 4.689±0.26 6.364±1.67 4.076±1.85 4.238±1.43
ENSMUST00000148774 N/A 6.130±1.05 N/A N/A 4.898±0.83 3.780±0.00 N/A N/A N/A N/A N/A 6.975±1.51 N/A N/A

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