C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP4 pre-mRNA processing factor 4 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084524 Prpf4-001 ENSMUSG00000066148 10090 + 4:62408797-62426990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084524
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084524 5.281±1.87 6.857±2.14 3.708±0.02 4.877±2.49 4.215±0.47 3.363±1.15 3.160±0.43 5.231±0.38 4.973±2.40 4.076±1.08 4.689±0.26 6.364±1.67 4.076±1.85 4.238±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CB CIL_0002CB_0003 CGP 4:62383654-62426990
CIL_0004CQ CIL_0004CQ_0002 CGP 4:62408797-62435252

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0015030 IEA Cajal body
GO:0071001 IEA U4/U6 snRNP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374198 PRPF4-002 protein_coding Homo_sapiens 0 2161
ENST00000374199 PRPF4-001 protein_coding Homo_sapiens 0 2169

Loading