C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002CB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000077815-ENSDARG00000067639 CGP 7955 5:58802072-58896115
GeneTranscriptPositionBiotype
ENSDARG00000067639 (prpf4)
PRP4 pre-mRNA processing factor 4 homolog (yeast)
ENSDART00000097395 (prpf4-001) 58884595-58896115 protein_coding
ENSDARG00000077815 (cdc26)
cell division cycle 26 homolog
ENSDART00000112793 (cdc26-201) 58802072-58803345 protein_coding
CIL_0002CB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176386-ENSG00000136875 CGP 9606 9:113255835-113292905
GeneTranscriptPositionBiotype
ENSG00000136868 (SLC31A1)
solute carrier family 31 (copper transporter), member 1
ENST00000374212 (SLC31A1-001) 113221562-113264492 protein_coding
ENST00000496650 (SLC31A1-003) 113221587-113227660 processed_transcript
ENSG00000136875 (PRPF4)
pre-mRNA processing factor 4
ENST00000374198 (PRPF4-002) 113275642-113292776 protein_coding
ENST00000374199 (PRPF4-001) 113275343-113292905 protein_coding
ENST00000488937 (PRPF4-003) 113279096-113283176 processed_transcript
ENSG00000176386 (CDC26)
cell division cycle 26
ENST00000374206 (CDC26-002) 113267008-113275589 protein_coding
ENST00000490408 (CDC26-001) 113255835-113275549 processed_transcript
CIL_0002CB_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066149-ENSMUSG00000066148 CGP 10090 4:62383654-62426990
GeneTranscriptPositionBiotype
ENSMUSG00000066148 (Prpf4)
PRP4 pre-mRNA processing factor 4 homolog (yeast)
ENSMUST00000084524 (Prpf4-001) 62408797-62426990 protein_coding
ENSMUST00000148774 (Prpf4-002) 62421844-62423331 processed_transcript
ENSMUSG00000066149 (Cdc26)
cell division cycle 26
ENSMUST00000084525 (Cdc26-001) 62394583-62408642 protein_coding
ENSMUST00000107459 (Cdc26-004) 62394634-62408625 protein_coding
ENSMUST00000134727 (Cdc26-003) 62383654-62408642 nonsense_mediated_decay
ENSMUST00000156854 (Cdc26-002) 62400832-62405514 retained_intron
ENSMUSG00000066150 (Slc31a1)
solute carrier family 31, member 1
ENSMUST00000084526 (Slc31a1-001) 62360727-62391769 protein_coding
ENSMUST00000122092 (Slc31a1-002) 62385501-62391769 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CB_0001ENSDARG00000067639ENSDART00000097395ENSDARG00000077815ENSDART00000112793CIL_0002CB_0002ENSG00000136868ENST00000374212ENST00000496650ENSG00000136875ENST00000374198ENST00000374199ENST00000488937ENSG00000176386ENST00000374206ENST00000490408CIL_0002CB_0003ENSMUSG00000066148ENSMUST00000084524ENSMUST00000148774ENSMUSG00000066149ENSMUST00000084525ENSMUST00000107459ENSMUST00000134727ENSMUST00000156854ENSMUSG00000066150ENSMUST00000084526ENSMUST00000122092
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CB_0001ENSDARG00000067639ENSDART00000097395ENSDARG00000077815ENSDART00000112793CIL_0002CB_0002ENSG00000136868ENST00000374212ENSG00000136875ENST00000374198ENST00000374199ENSG00000176386ENST00000374206CIL_0002CB_0003ENSMUSG00000066148ENSMUST00000084524ENSMUST00000148774ENSMUSG00000066149ENSMUST00000084525ENSMUST00000107459ENSMUST00000134727ENSMUST00000156854ENSMUSG00000066150ENSMUST00000084526ENSMUST00000122092
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000067639 ENSDART00000097395 N/A N/A N/A 0.345±0.00 N/A N/A 0.391±0.28 0.481±0.00 0.362±0.00 N/A 0.106±0.00 N/A N/A N/A
ENSDARG00000077815 ENSDART00000112793 N/A N/A N/A 7.212±0.00 N/A N/A 27.964±0.00 125.640±0.00 7.135±0.00 N/A 12.213±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136868 ENST00000374212 4.109±0.00 3.101±0.00 1.466±0.00 0.833±0.28 3.047±1.81 2.244±0.08 2.159±1.00 12.180±5.79 9.967±7.54 3.978±1.36 0.660±0.14 3.902±1.35 6.573±0.89 3.767±0.78
ENST00000496650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136875 ENST00000374198 3.990±0.00 5.856±0.00 0.861±0.00 4.526±0.00 1.960±0.00 1.030±0.00 1.896±0.00 2.009±0.71 1.868±0.10 2.531±0.00 2.388±0.00 7.938±3.87 4.472±0.42 6.431±0.00
ENST00000374199 4.436±0.00 3.449±0.00 1.378±0.00 3.202±0.71 3.753±0.27 3.504±2.46 1.754±0.47 3.314±1.91 2.411±0.57 4.989±0.00 2.589±1.17 5.654±2.44 5.727±2.38 4.852±0.29
ENST00000488937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176386 ENST00000374206 17.362±0.00 10.822±0.00 4.579±0.00 8.920±1.83 11.472±0.69 14.839±8.32 7.753±1.16 10.997±0.83 9.251±6.12 10.998±2.53 5.154±0.64 24.242±18.14 16.825±6.57 14.141±0.87
ENST00000490408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000066148 ENSMUST00000084524 5.281±1.87 6.857±2.14 3.708±0.02 4.877±2.49 4.215±0.47 3.363±1.15 3.160±0.43 5.231±0.38 4.973±2.40 4.076±1.08 4.689±0.26 6.364±1.67 4.076±1.85 4.238±1.43
ENSMUST00000148774 N/A 6.130±1.05 N/A N/A 4.898±0.83 3.780±0.00 N/A N/A N/A N/A N/A 6.975±1.51 N/A N/A
ENSMUSG00000066149 ENSMUST00000084525 14.889±2.73 7.659±2.19 25.820±2.45 20.787±7.04 12.098±2.22 8.579±1.26 12.773±1.83 12.441±1.44 20.082±13.84 12.879±1.09 16.642±0.61 13.261±11.16 29.807±3.98 8.181±0.59
ENSMUST00000107459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.839±0.00
ENSMUST00000134727 0.916±0.40 0.989±0.00 1.101±0.04 2.705±0.39 0.689±0.08 0.431±0.00 0.352±0.02 0.638±0.13 0.676±0.30 0.817±0.04 1.059±0.06 1.971±0.62 1.073±0.22 0.262±0.05
ENSMUST00000156854 2.959±0.77 3.234±0.79 2.007±0.21 1.914±0.52 2.336±0.98 2.576±0.59 0.832±0.10 1.696±0.47 1.457±0.52 3.503±0.18 N/A 3.949±1.29 1.463±0.01 0.968±0.05
ENSMUSG00000066150 ENSMUST00000084526 15.323±0.13 14.216±1.00 7.287±1.14 10.296±6.81 9.797±1.09 31.581±2.80 7.422±0.33 41.124±3.20 46.202±18.88 22.214±1.86 4.318±0.24 15.855±3.53 18.855±11.02 8.153±3.55
ENSMUST00000122092 N/A 2.417±0.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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