C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067377 Tspan6 10090 - X:133891068-133898429 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087557 Tspan6-001 133891068-133898429 protein_coding
  ENSMUST00000176641 Tspan6-004 133894521-133898294 protein_coding
  ENSMUST00000176718 Tspan6-003 133892702-133898294 protein_coding
  ENSMUST00000177468 Tspan6-002 133896718-133898113 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087557ENSMUST00000176641ENSMUST00000176718
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087557 3.688±0.55 1.799±0.05 42.991±8.64 33.156±22.06 3.323±1.53 1.696±0.55 2.875±0.71 3.636±1.25 2.201±2.14 3.821±1.61 1.256±0.20 6.800±5.01 6.036±3.81 11.845±2.01
ENSMUST00000176641 N/A N/A N/A 36.115±0.00 N/A N/A N/A N/A N/A N/A N/A 108.479±0.00 35.479±8.93 320.689±0.00
ENSMUST00000176718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.973±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B5 CIL_0007B5_0002 CGP X:133850980-133898429
CIL_0007B6 CIL_0007B6_0002 CGP X:133891068-133932446

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0007165 IEA signal transduction
GO:0016021 IEA integral component of membrane
GO:0039532 IEA negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070062 IEA extracellular vesicular exosome
GO:1901223 IEA negative regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015759 tspan7 tetraspanin 7 protein_coding Danio_rerio
ENSG00000000003 TSPAN6 tetraspanin 6 protein_coding Homo_sapiens

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