C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000000003 TSPAN6 9606 - X:100627109-100639991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373020 TSPAN6-001 100628670-100636806 protein_coding
  ENST00000494424 TSPAN6-002 100633442-100639991 processed_transcript
  ENST00000496771 TSPAN6-003 100632541-100636689 processed_transcript
  ENST00000612152 TSPAN6-201 100627109-100637104 protein_coding
  ENST00000614008 TSPAN6-202 100632063-100637104 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373020ENST00000494424ENST00000496771ENST00000612152ENST00000614008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373020 23.692±0.00 5.181±0.00 5.785±0.00 3.397±0.92 12.093±3.97 10.650±2.86 1.641±0.43 18.750±3.89 18.784±14.27 8.540±2.82 0.401±0.16 23.043±7.58 15.717±3.89 22.473±10.57
ENST00000494424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.550±0.00
ENST00000496771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.288±0.00 28.288±0.00 9.668±0.00 44.319±0.00
ENST00000612152 N/A N/A N/A 0.463±0.00 N/A N/A 0.197±0.00 N/A 0.756±0.00 N/A N/A 0.953±0.00 N/A N/A
ENST00000614008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.343±0.00 N/A N/A 22.635±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B5 CIL_0007B5_0001 CGP X:100584802-100639991
CIL_0007B6 CIL_0007B6_0001 CGP X:100627109-100671299

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005515 IPI protein binding
GO:0007165 IMP signal transduction
GO:0016021 IEA integral component of membrane
GO:0039532 IMP negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070062 IDA extracellular vesicular exosome
GO:1901223 IDA negative regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015759 tspan7 tetraspanin 7 protein_coding Danio_rerio
ENSMUSG00000067377 Tspan6 tetraspanin 6 protein_coding Mus_musculus

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