C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087557 Tspan6-001 ENSMUSG00000067377 10090 - X:133891068-133898429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087557
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087557 3.688±0.55 1.799±0.05 42.991±8.64 33.156±22.06 3.323±1.53 1.696±0.55 2.875±0.71 3.636±1.25 2.201±2.14 3.821±1.61 1.256±0.20 6.800±5.01 6.036±3.81 11.845±2.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B5 CIL_0007B5_0002 CGP X:133850980-133898429
CIL_0007B6 CIL_0007B6_0002 CGP X:133891068-133932446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0007165 IEA signal transduction
GO:0016021 IEA integral component of membrane
GO:0039532 IEA negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070062 IEA extracellular vesicular exosome
GO:1901223 IEA negative regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373020 TSPAN6-001 protein_coding Homo_sapiens 0 918
ENST00000494424 TSPAN6-002 processed_transcript Homo_sapiens 0 525
ENST00000496771 TSPAN6-003 processed_transcript Homo_sapiens 0 582
ENST00000612152 TSPAN6-201 protein_coding Homo_sapiens 0 555
ENST00000614008 TSPAN6-202 protein_coding Homo_sapiens 0 664

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