C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: notochord homolog (Xenopus laevis)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068302 Noto 10090 + 6:85423886-85428877 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000089578 Noto-001 85423886-85428877 protein_coding
  ENSMUST00000174469 Noto-002 85424068-85428277 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLungOvaryPlacentaTestisENSMUST00000089578ENSMUST00000174469
Transcript ID Kidney Lung Ovary Placenta Testis
ENSMUST00000089578 0.018±0.00 0.055±0.03 2.392±1.33 0.012±0.01 0.040±0.02
ENSMUST00000174469 N/A N/A 1.273±0.36 0.026±0.00 0.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0003EE CIL_0003EE_0002 CGP 6:85334963-85428877
CIL_0003EF CIL_0003EF_0002 CGP 6:85423886-85446435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007368 IMP determination of left/right symmetry
GO:0009880 IMP embryonic pattern specification
GO:0009953 IMP dorsal/ventral pattern formation
GO:0030903 IMP notochord development
GO:0060271 IGI cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000214513 NOTO notochord homeobox protein_coding Homo_sapiens

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