C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: notochord homolog (Xenopus laevis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089578 Noto-001 ENSMUSG00000068302 10090 + 6:85423886-85428877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLungOvaryPlacentaTestisENSMUST00000089578
Transcript ID Kidney Lung Ovary Placenta Testis
ENSMUST00000089578 0.018±0.00 0.055±0.03 2.392±1.33 0.012±0.01 0.040±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0003EE CIL_0003EE_0002 CGP 6:85334963-85428877
CIL_0003EF CIL_0003EF_0002 CGP 6:85423886-85446435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007368 IMP determination of left/right symmetry
GO:0009880 IMP embryonic pattern specification
GO:0009953 IMP dorsal/ventral pattern formation
GO:0030903 IMP notochord development
GO:0060271 IGI cilium morphogenesis

Homologs

No Homologs available.

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