C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003EF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000214513-ENSG00000135632 CGP 9606 2:73202258-73227237
GeneTranscriptPositionBiotype
ENSG00000135632 (SMYD5)
SMYD family member 5 		ENST00000258100 (SMYD5-002) 73214238-73223106 nonsense_mediated_decay
ENST00000389501 (SMYD5-001) 73214222-73227237 protein_coding
ENST00000413491 (SMYD5-003) 73214222-73221213 nonsense_mediated_decay
ENST00000443900 (SMYD5-004) 73214567-73221194 protein_coding
ENST00000474652 (SMYD5-005) 73214590-73221922 processed_transcript
ENST00000477038 (SMYD5-007) 73221176-73223167 retained_intron
ENST00000486518 (SMYD5-008) 73225222-73225881 processed_transcript
ENST00000491204 (SMYD5-006) 73219917-73220721 processed_transcript
ENSG00000214513 (NOTO)
notochord homeobox 		ENST00000398468 (NOTO-001) 73202258-73212513 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0003EF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000068302-ENSMUSG00000033706 CGP 10090 6:85423886-85446435
GeneTranscriptPositionBiotype
ENSMUSG00000033706 (Smyd5)
SET and MYND domain containing 5 		ENSMUST00000045693 (Smyd5-001) 85431989-85446435 protein_coding
ENSMUST00000130928 (Smyd5-003) 85441740-85445197 retained_intron
ENSMUST00000134405 (Smyd5-004) 85441630-85445443 retained_intron
ENSMUST00000152218 (Smyd5-002) 85432002-85440342 processed_transcript
ENSMUST00000153749 (Smyd5-006) 85442573-85445432 processed_transcript
ENSMUST00000156322 (Smyd5-005) 85441725-85444960 processed_transcript
ENSMUSG00000068302 (Noto)
notochord homolog (Xenopus laevis) 		ENSMUST00000089578 (Noto-001) 85423886-85428877 protein_coding
ENSMUST00000174469 (Noto-002) 85424068-85428277 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003EF_0001ENSG00000135632ENST00000258100ENST00000389501ENST00000413491ENST00000443900ENST00000474652ENST00000477038ENST00000486518ENST00000491204ENSG00000214513ENST00000398468CIL_0003EF_0002ENSMUSG00000033706ENSMUST00000045693ENSMUST00000130928ENSMUST00000134405ENSMUST00000152218ENSMUST00000153749ENSMUST00000156322ENSMUSG00000068302ENSMUST00000089578ENSMUST00000174469
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003EF_0001ENSG00000135632ENST00000258100ENST00000389501ENST00000443900ENST00000477038ENSG00000214513ENST00000398468CIL_0003EF_0002ENSMUSG00000033706ENSMUST00000045693ENSMUST00000130928ENSMUST00000152218ENSMUST00000153749ENSMUSG00000068302ENSMUST00000089578ENSMUST00000174469
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135632 ENST00000258100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.348±0.00 N/A N/A N/A
ENST00000389501 4.433±0.00 12.992±0.00 1.143±0.00 4.182±2.43 6.558±0.00 2.347±2.20 2.937±2.58 4.680±4.53 1.303±0.83 2.294±2.16 1.987±1.93 10.297±5.34 9.422±3.28 5.664±0.52
ENST00000413491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443900 N/A N/A N/A N/A N/A N/A N/A 0.513±0.00 N/A N/A N/A N/A N/A N/A
ENST00000474652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477038 N/A N/A N/A N/A N/A N/A N/A N/A 1.652±0.00 1.279±0.00 N/A N/A N/A N/A
ENST00000486518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214513 ENST00000398468 0.087±0.00 0.172±0.00 N/A 0.070±0.00 0.007±0.00 0.026±0.00 0.026±0.02 0.113±0.00 0.024±0.00 0.013±0.00 0.109±0.00 0.007±0.00 N/A 0.101±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033706 ENSMUST00000045693 13.259±3.49 13.251±0.71 7.386±1.17 14.391±6.24 10.021±1.03 6.824±0.48 4.098±1.37 7.163±0.77 9.315±3.35 8.183±0.40 3.016±0.23 19.196±6.22 13.431±5.09 3.963±0.38
ENSMUST00000130928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.430±0.00
ENSMUST00000134405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.973±0.00 N/A N/A
ENSMUST00000153749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.625±0.00
ENSMUST00000156322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000068302 ENSMUST00000089578 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.055±0.03 N/A 2.392±1.33 0.012±0.01 0.040±0.02
ENSMUST00000174469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.273±0.36 0.026±0.00 0.060±0.00

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