C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cold shock domain containing E1, RNA binding
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068823 Csde1 10090 + 3:103020546-103058189 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029446 Csde1-201 103020546-103058189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029446
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029446 37.203±3.90 12.397±1.73 40.545±9.18 26.928±4.60 21.737±2.39 14.663±2.30 20.404±3.86 22.657±3.61 17.775±2.94 30.280±5.30 71.970±30.02 25.961±14.82 43.294±4.30 56.162±5.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005737 IEA cytoplasm
GO:0005743 IDA mitochondrial inner membrane
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044822 IEA poly(A) RNA binding
GO:0070937 IEA CRD-mediated mRNA stability complex
GO:0070966 IEA nuclear-transcribed mRNA catabolic process, no-go decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062157 csde1 cold shock domain containing E1, RNA-binding protein_coding Danio_rerio
ENSDARG00000074758 csde1 cold shock domain containing E1, RNA-binding protein_coding Danio_rerio
ENSG00000009307 CSDE1 cold shock domain containing E1, RNA-binding protein_coding Homo_sapiens

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