C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cold shock domain containing E1, RNA binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029446 Csde1-201 ENSMUSG00000068823 10090 + 3:103020546-103058189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029446
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029446 37.203±3.90 12.397±1.73 40.545±9.18 26.928±4.60 21.737±2.39 14.663±2.30 20.404±3.86 22.657±3.61 17.775±2.94 30.280±5.30 71.970±30.02 25.961±14.82 43.294±4.30 56.162±5.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005737 IEA cytoplasm
GO:0005743 IDA mitochondrial inner membrane
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044822 IEA poly(A) RNA binding
GO:0070937 IEA CRD-mediated mRNA stability complex
GO:0070966 IEA nuclear-transcribed mRNA catabolic process, no-go decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132680 csde1-002 processed_transcript Danio_rerio 0.000000000000002 90
ENSDART00000134542 csde1-001 protein_coding Danio_rerio 0.000000000000002 90
ENST00000261443 CSDE1-003 protein_coding Homo_sapiens 0 4021
ENST00000315475 ZNF354C-001 protein_coding Homo_sapiens 0 833
ENST00000339438 CSDE1-001 protein_coding Homo_sapiens 0 4508
ENST00000358528 CSDE1-002 protein_coding Homo_sapiens 0 5288
ENST00000369530 CSDE1-004 protein_coding Homo_sapiens 0 4015
ENST00000438362 CSDE1-008 protein_coding Homo_sapiens 0 5134
ENST00000483030 CSDE1-006 retained_intron Homo_sapiens 0 761
ENST00000483407 CSDE1-005 processed_transcript Homo_sapiens 0 789
ENST00000523735 RP11-281O15.7-001 processed_pseudogene Homo_sapiens 0 590
ENST00000524652 CSDE1-011 processed_transcript Homo_sapiens 0 490
ENST00000525132 CSDE1-015 protein_coding Homo_sapiens 0 473
ENST00000525878 CSDE1-010 protein_coding Homo_sapiens 0 484
ENST00000525970 CSDE1-013 protein_coding Homo_sapiens 0 599
ENST00000529046 CSDE1-014 protein_coding Homo_sapiens 0 630
ENST00000530784 CSDE1-017 retained_intron Homo_sapiens 0 379
ENST00000530886 CSDE1-007 protein_coding Homo_sapiens 0 4021
ENST00000533818 CSDE1-012 processed_transcript Homo_sapiens 0 599
ENST00000534389 CSDE1-016 protein_coding Homo_sapiens 0 435
ENST00000534699 CSDE1-009 protein_coding Homo_sapiens 0 4015
ENST00000610726 CSDE1-201 protein_coding Homo_sapiens 0 5138

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