C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cold shock domain containing E1, RNA-binding
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000009307 CSDE1 9606 - 1:114716913-114758676 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261443 CSDE1-003 114717295-114757974 protein_coding
  ENST00000339438 CSDE1-001 114716913-114757983 protein_coding
  ENST00000358528 CSDE1-002 114716917-114757964 protein_coding
  ENST00000369530 CSDE1-004 114717312-114758003 protein_coding
  ENST00000438362 CSDE1-008 114716916-114750190 protein_coding
  ENST00000483030 CSDE1-006 114720216-114726348 retained_intron
  ENST00000483407 CSDE1-005 114717802-114718938 processed_transcript
  ENST00000524652 CSDE1-011 114749821-114757987 processed_transcript
  ENST00000525132 CSDE1-015 114736758-114757969 protein_coding
  ENST00000525878 CSDE1-010 114739753-114758676 protein_coding
  ENST00000525970 CSDE1-013 114739870-114757987 protein_coding
  ENST00000529046 CSDE1-014 114733769-114757987 protein_coding
  ENST00000530784 CSDE1-017 114720578-114724287 retained_intron
  ENST00000530886 CSDE1-007 114717305-114758027 protein_coding
  ENST00000533818 CSDE1-012 114748317-114757987 processed_transcript
  ENST00000534389 CSDE1-016 114737988-114746859 protein_coding
  ENST00000534699 CSDE1-009 114717957-114757982 protein_coding
  ENST00000610726 CSDE1-201 114716914-114758050 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261443ENST00000339438ENST00000358528ENST00000369530ENST00000438362ENST00000525970ENST00000534699ENST00000610726
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261443 29.786±0.00 N/A 4.592±0.00 N/A N/A 23.661±9.37 28.593±0.00 33.724±0.00 12.999±0.00 36.614±0.00 131.774±0.00 24.230±6.51 26.303±12.75 54.857±0.00
ENST00000339438 108.651±0.00 74.287±0.00 7.458±0.00 45.250±15.04 95.786±72.99 78.424±59.21 55.736±0.00 44.557±15.04 35.758±10.13 57.484±26.59 78.699±50.94 43.292±26.59 43.796±8.12 88.919±39.13
ENST00000358528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.262±0.00 N/A N/A
ENST00000369530 N/A N/A N/A N/A 11.996±0.00 N/A 33.524±1.67 N/A 16.153±0.00 10.265±0.00 70.149±0.00 N/A N/A N/A
ENST00000438362 N/A N/A N/A N/A N/A N/A 78.047±0.00 N/A N/A N/A 139.086±0.00 N/A N/A N/A
ENST00000525970 N/A N/A 32.469±0.00 N/A 113.152±0.00 107.536±0.00 120.700±0.00 62.620±0.00 224.249±0.00 87.848±0.00 224.063±0.00 169.828±0.00 N/A N/A
ENST00000534699 46.089±0.00 38.157±0.00 10.586±0.00 30.468±14.58 52.354±34.33 34.969±22.01 N/A 9.183±0.00 37.098±0.00 12.936±0.00 N/A 45.846±18.44 25.295±15.70 123.033±36.10
ENST00000610726 N/A N/A N/A N/A N/A N/A 9.543±0.00 N/A N/A N/A 112.117±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005737 IDA cytoplasm
GO:0005743 IEA mitochondrial inner membrane
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008584 TAS male gonad development
GO:0044822 IDA poly(A) RNA binding
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0070966 IMP nuclear-transcribed mRNA catabolic process, no-go decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062157 csde1 cold shock domain containing E1, RNA-binding protein_coding Danio_rerio
ENSDARG00000074758 csde1 cold shock domain containing E1, RNA-binding protein_coding Danio_rerio
ENSMUSG00000068823 Csde1 cold shock domain containing E1, RNA binding protein_coding Mus_musculus

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