C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071172 Srsf3 10090 + 17:29032673-29043366 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037776 Srsf3-002 29032673-29042263 nonsense_mediated_decay
  ENSMUST00000130216 Srsf3-001 29032673-29043366 protein_coding
  ENSMUST00000144551 Srsf3-004 29036379-29040141 retained_intron
  ENSMUST00000147265 Srsf3-003 29032673-29042243 retained_intron
  ENSMUST00000150157 Srsf3-005 29040667-29042059 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037776ENSMUST00000130216ENSMUST00000144551ENSMUST00000147265ENSMUST00000150157
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037776 7.664±3.07 N/A 39.715±1.65 48.325±19.28 6.510±2.95 N/A 6.511±1.25 5.864±1.66 29.393±31.35 11.674±5.32 6.388±0.64 27.990±14.00 39.344±23.55 12.672±2.39
ENSMUST00000130216 6.351±2.92 N/A 19.439±0.39 49.861±12.19 N/A 5.806±0.43 4.013±0.82 5.604±1.61 21.236±19.96 7.863±0.47 4.885±0.42 17.960±1.32 23.747±12.59 6.261±0.96
ENSMUST00000144551 10.418±2.00 42.161±2.08 N/A 17.089±0.00 33.856±8.07 33.375±8.35 5.261±0.00 9.594±1.45 4.370±1.61 23.799±7.83 N/A 51.733±5.79 31.261±17.31 10.353±0.00
ENSMUST00000147265 6.700±2.97 6.531±1.73 19.565±0.00 22.444±17.05 7.492±2.66 7.313±1.85 4.975±2.12 3.144±0.56 10.769±9.03 10.509±0.66 3.870±0.56 10.287±3.02 8.826±4.39 2.919±1.19
ENSMUST00000150157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.340±0.50 N/A 33.019±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 TAS RNA binding
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008286 TAS insulin receptor signaling pathway
GO:0008380 TAS RNA splicing
GO:0016607 IDA nuclear speck
GO:0043274 IPI phospholipase binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025397 srsf3a serine/arginine-rich splicing factor 3a protein_coding Danio_rerio
ENSDARG00000059360 srsf3b serine/arginine-rich splicing factor 3b protein_coding Danio_rerio

Loading