C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037776 Srsf3-002 ENSMUSG00000071172 10090 + 17:29032673-29042263 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037776
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037776 7.664±3.07 39.715±1.65 48.325±19.28 6.510±2.95 6.511±1.25 5.864±1.66 29.393±31.35 11.674±5.32 6.388±0.64 27.990±14.00 39.344±23.55 12.672±2.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 TAS RNA binding
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008286 TAS insulin receptor signaling pathway
GO:0008380 TAS RNA splicing
GO:0016607 IDA nuclear speck
GO:0043274 IPI phospholipase binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339436 SRSF3-003 retained_intron Homo_sapiens 0 1341
ENST00000373715 SRSF3-001 protein_coding Homo_sapiens 0 579
ENST00000436597 AC092106.1-001 processed_pseudogene Homo_sapiens 0 412
ENST00000458090 AC009963.6-001 processed_pseudogene Homo_sapiens 0 405
ENST00000477442 SRSF3-002 nonsense_mediated_decay Homo_sapiens 0 1624
ENST00000537438 RP11-137N23.1-001 processed_pseudogene Homo_sapiens 0 213
ENST00000613941 SRSF3-006 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000614136 SRSF3-005 retained_intron Homo_sapiens 0 407
ENST00000620242 SRSF3-008 retained_intron Homo_sapiens 0 305
ENST00000620389 SRSF3-004 retained_intron Homo_sapiens 0 848
ENST00000620941 SRSF3-007 protein_coding Homo_sapiens 0 477

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