C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: copine I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074643 Cpne1 10090 - 2:156071842-156111965 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079312 Cpne1-008 156073355-156111901 protein_coding
  ENSMUST00000109607 Cpne1-002 156071845-156111939 protein_coding
  ENSMUST00000109608 Cpne1-001 156071847-156111943 protein_coding
  ENSMUST00000126513 Cpne1-007 156073333-156074295 processed_transcript
  ENSMUST00000133921 Cpne1-011 156078574-156111909 protein_coding
  ENSMUST00000136296 Cpne1-005 156074201-156111965 protein_coding
  ENSMUST00000140109 Cpne1-006 156073389-156076254 protein_coding
  ENSMUST00000142960 Cpne1-013 156078167-156111959 protein_coding
  ENSMUST00000142975 Cpne1-003 156071845-156111888 retained_intron
  ENSMUST00000147627 Cpne1-009 156073508-156111904 nonsense_mediated_decay
  ENSMUST00000147956 Cpne1-014 156074098-156076552 retained_intron
  ENSMUST00000153634 Cpne1-010 156077399-156111909 protein_coding
  ENSMUST00000154889 Cpne1-012 156078900-156111863 protein_coding
  ENSMUST00000183353 Cpne1-017 156077420-156078591 retained_intron
  ENSMUST00000183733 Cpne1-018 156073516-156078160 nonsense_mediated_decay
  ENSMUST00000184152 Cpne1-016 156078911-156102628 protein_coding
  ENSMUST00000184265 Cpne1-015 156071842-156111935 protein_coding
  ENSMUST00000184933 Cpne1-019 156073394-156076279 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000109607ENSMUST00000183733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000109607 20.708±2.16 24.372±1.79 17.247±2.08 19.908±0.78 24.896±6.01 14.404±0.54 13.399±0.89 11.048±3.64 23.905±1.52 22.114±6.58 13.802±3.29 2.166±0.00
ENSMUST00000183733 N/A N/A N/A N/A 38.600±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FU CIL_0005FU_0002 CGP 2:156065175-156111965

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001786 IEA phosphatidylserine binding
GO:0005515 IPI protein binding
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075536 cpne1 copine I protein_coding Danio_rerio
ENSG00000214078 CPNE1 copine I protein_coding Homo_sapiens

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