C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005FU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000061656-ENSG00000214078 CGP 9606 20:35615892-35664956
GeneTranscriptPositionBiotype
ENSG00000061656 (SPAG4)
sperm associated antigen 4 		ENST00000374273 (SPAG4-001) 35615892-35621049 protein_coding
ENST00000430878 (SPAG4-007) 35619585-35621049 protein_coding
ENST00000454819 (SPAG4-002) 35617024-35619688 protein_coding
ENST00000462896 (SPAG4-006) 35617024-35618852 processed_transcript
ENST00000463973 (SPAG4-003) 35616880-35618896 retained_intron
ENST00000468248 (SPAG4-004) 35617046-35619736 retained_intron
ENST00000498203 (SPAG4-005) 35617689-35620934 retained_intron
ENSG00000222460 (RN7SKP271)
RNA, 7SK small nuclear pseudogene 271 		ENST00000410528 (RN7SKP271-201) 35643143-35643462 misc_RNA
ENSG00000244462 (RBM12)
RNA binding motif protein 12 		ENST00000359646 (RBM12-003) 35650142-35664888 protein_coding
ENST00000374104 (RBM12-002) 35650326-35664900 protein_coding
ENST00000374114 (RBM12-001) 35648925-35664916 protein_coding
ENST00000424458 (RBM12-004) 35654450-35664889 protein_coding
ENST00000431148 (RBM12-005) 35654893-35664956 protein_coding
ENST00000435161 (RBM12-006) 35654921-35664934 protein_coding
ENSG00000252549 (RNU6-759P)
RNA, U6 small nuclear 759, pseudogene 		ENST00000516740 (RNU6-759P-201) 35647328-35647430 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005FU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038180-ENSMUSG00000074643 CGP 10090 2:156065175-156111965
GeneTranscriptPositionBiotype
ENSMUSG00000038180 (Spag4)
sperm associated antigen 4 		ENSMUST00000038860 (Spag4-001) 156065244-156069501 protein_coding
ENSMUST00000125996 (Spag4-003) 156065198-156070617 retained_intron
ENSMUST00000131144 (Spag4-008) 156065553-156067528 nonsense_mediated_decay
ENSMUST00000133511 (Spag4-002) 156065175-156069501 retained_intron
ENSMUST00000136765 (Spag4-004) 156065227-156069224 retained_intron
ENSMUST00000137966 (Spag4-005) 156065742-156068050 protein_coding
ENSMUST00000138178 (Spag4-007) 156065437-156067322 nonsense_mediated_decay
ENSMUST00000149139 (Spag4-006) 156066735-156069378 processed_transcript
ENSMUSG00000089824 (Rbm12)
RNA binding motif protein 12 		ENSMUST00000059647 (Rbm12-001) 156091958-156111956 protein_coding
ENSMUST00000109604 (Rbm12-002) 156091958-156111956 protein_coding
ENSMUST00000128499 (Rbm12-005) 156097921-156111978 protein_coding
ENSMUST00000131377 (Rbm12-004) 156097485-156111916 protein_coding
ENSMUST00000138068 (Rbm12-006) 156097950-156111961 protein_coding
ENSMUSG00000098950 (Gm28036)
predicted gene, 28036 		ENSMUST00000127956 (Gm28036-002) 156071845-156098085 nonsense_mediated_decay
ENSMUST00000132494 (Gm28036-001) 156071845-156111901 nonsense_mediated_decay
ENSMUST00000159952 (Gm28036-008) 156078929-156127092 nonsense_mediated_decay
ENSMUST00000160165 (Gm28036-007) 156078929-156127092 nonsense_mediated_decay
ENSMUST00000162612 (Gm28036-006) 156078929-156127092 nonsense_mediated_decay
ENSMUST00000183518 (Gm28036-003) 156079424-156111931 protein_coding
ENSMUST00000183972 (Gm28036-005) 156079097-156096928 nonsense_mediated_decay
ENSMUST00000184899 (Gm28036-004) 156079091-156111926 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FU_0001ENSG00000061656ENST00000374273ENST00000430878ENST00000454819ENST00000462896ENST00000463973ENST00000468248ENST00000498203ENSG00000222460ENST00000410528ENSG00000244462ENST00000359646ENST00000374104ENST00000374114ENST00000424458ENST00000431148ENST00000435161ENSG00000252549ENST00000516740CIL_0005FU_0002ENSMUSG00000038180ENSMUST00000038860ENSMUST00000125996ENSMUST00000131144ENSMUST00000133511ENSMUST00000136765ENSMUST00000137966ENSMUST00000138178ENSMUST00000149139ENSMUSG00000089824ENSMUST00000059647ENSMUST00000109604ENSMUST00000128499ENSMUST00000131377ENSMUST00000138068ENSMUSG00000098950ENSMUST00000127956ENSMUST00000132494ENSMUST00000159952ENSMUST00000160165ENSMUST00000162612ENSMUST00000183518ENSMUST00000183972ENSMUST00000184899
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FU_0001ENSG00000061656ENST00000374273ENST00000430878ENST00000454819ENST00000462896ENST00000463973ENST00000468248ENST00000498203ENSG00000222460ENST00000410528ENSG00000244462ENST00000359646ENST00000374104ENST00000374114ENST00000424458ENSG00000252549ENST00000516740CIL_0005FU_0002ENSMUSG00000038180ENSMUST00000038860ENSMUST00000125996ENSMUST00000133511ENSMUST00000136765ENSMUST00000137966ENSMUST00000138178ENSMUST00000149139ENSMUSG00000089824ENSMUST00000059647ENSMUST00000109604ENSMUSG00000098950ENSMUST00000127956
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000061656 ENST00000374273 N/A N/A N/A N/A 0.613±0.00 N/A N/A 0.517±0.40 0.350±0.00 1.362±0.00 0.289±0.00 1.232±0.43 0.972±0.00 4.508±0.79
ENST00000430878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.420±0.00 N/A N/A
ENST00000454819 0.477±0.00 N/A N/A 0.723±0.00 0.617±0.21 0.237±0.00 N/A 0.610±0.00 N/A N/A 0.356±0.00 3.944±0.00 1.120±0.46 8.300±5.66
ENST00000462896 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.637±0.00 N/A N/A N/A N/A
ENST00000463973 N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A 0.127±0.00 0.749±0.00 N/A N/A
ENST00000468248 0.586±0.00 4.465±0.00 N/A 0.262±0.00 N/A 0.052±0.00 N/A N/A N/A N/A N/A 0.590±0.00 N/A N/A
ENST00000498203 N/A 4.751±0.00 N/A 0.879±0.00 N/A 0.530±0.00 0.424±0.00 1.047±0.00 N/A N/A N/A N/A 0.918±0.67 2.448±0.00
ENSG00000222460 ENST00000410528 0.492±0.00 0.328±0.00 1.021±0.00 0.274±0.09 1.089±0.88 0.566±0.00 0.328±0.27 1.360±1.09 1.854±1.74 N/A N/A 0.358±0.00 N/A 0.137±0.00
ENSG00000244462 ENST00000359646 N/A N/A 1.855±0.00 N/A 4.497±0.00 N/A N/A 1.804±0.00 N/A 4.991±0.00 N/A 14.697±10.62 11.841±0.00 10.923±0.00
ENST00000374104 7.623±0.00 13.510±0.00 N/A 3.877±1.31 8.244±0.00 4.455±1.86 4.182±1.38 7.470±0.00 3.573±1.02 7.564±0.00 3.321±0.31 11.582±0.22 11.433±1.72 7.894±0.00
ENST00000374114 4.820±0.00 8.618±0.00 1.658±0.00 3.605±1.40 4.449±0.88 4.426±1.37 2.274±0.66 5.461±0.00 2.529±1.07 3.905±0.18 N/A 6.781±1.85 N/A 4.873±0.58
ENST00000424458 N/A N/A 9.944±0.00 12.478±0.00 18.809±0.00 16.919±0.00 10.925±0.00 N/A 21.437±0.00 15.502±0.00 7.166±0.00 N/A N/A N/A
ENST00000431148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252549 ENST00000516740 0.200±0.00 N/A N/A N/A 0.198±0.00 N/A N/A N/A 0.938±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038180 ENSMUST00000038860 0.912±0.48 0.236±0.12 0.515±0.04 N/A 0.310±0.00 0.142±0.03 0.220±0.12 0.345±0.13 0.302±0.15 0.213±0.10 0.082±0.02 0.447±0.17 0.136±0.05 150.444±62.72
ENSMUST00000125996 0.231±0.00 0.069±0.03 N/A 0.988±0.16 0.118±0.04 0.106±0.05 0.038±0.02 0.092±0.05 0.071±0.03 0.079±0.00 0.034±0.02 0.177±0.11 0.056±0.03 N/A
ENSMUST00000131144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133511 0.349±0.00 0.430±0.10 0.355±0.00 1.256±0.50 0.296±0.14 0.179±0.08 0.130±0.08 0.140±0.02 0.110±0.02 0.082±0.05 0.046±0.03 0.402±0.19 0.156±0.00 N/A
ENSMUST00000136765 0.352±0.00 N/A N/A 0.743±0.41 0.204±0.04 0.159±0.04 0.055±0.00 N/A N/A 0.085±0.01 N/A 0.209±0.15 0.035±0.01 N/A
ENSMUST00000137966 2.497±1.17 0.500±0.28 1.325±0.06 0.402±0.00 1.253±0.48 0.129±0.00 0.530±0.27 0.842±0.22 1.284±0.79 0.348±0.13 N/A 0.719±0.45 0.256±0.09 204.975±81.51
ENSMUST00000138178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A
ENSMUST00000149139 N/A N/A N/A N/A 0.479±0.00 N/A N/A N/A 0.687±0.16 N/A 0.027±0.00 N/A 0.072±0.00 N/A
ENSMUSG00000089824 ENSMUST00000059647 N/A N/A N/A 8.401±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.181±0.00 N/A
ENSMUST00000109604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.081±0.59 2.748±0.00 0.939±0.00
ENSMUST00000128499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098950 ENSMUST00000127956 N/A N/A N/A 2.901±0.00 N/A N/A N/A N/A N/A N/A N/A 9.269±1.38 8.996±3.17 3.178±1.16
ENSMUST00000132494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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