C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: copine I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109607 Cpne1-002 ENSMUSG00000074643 10090 - 2:156071845-156111939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000109607
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000109607 20.708±2.16 24.372±1.79 17.247±2.08 19.908±0.78 24.896±6.01 14.404±0.54 13.399±0.89 11.048±3.64 23.905±1.52 22.114±6.58 13.802±3.29 2.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FU CIL_0005FU_0002 CGP 2:156065175-156111965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317677 CPNE1-005 protein_coding Homo_sapiens 0 1777
ENST00000352393 CPNE1-004 protein_coding Homo_sapiens 0 1779
ENST00000359646 RBM12-003 protein_coding Homo_sapiens 3e-40 172
ENST00000374104 RBM12-002 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000374114 RBM12-001 protein_coding Homo_sapiens 0 200
ENST00000397442 CPNE1-032 protein_coding Homo_sapiens 0 1546
ENST00000397443 CPNE1-201 protein_coding Homo_sapiens 0 1978
ENST00000397445 CPNE1-202 protein_coding Homo_sapiens 0 1779
ENST00000401607 CPNE1-028 nonsense_mediated_decay Homo_sapiens 0 1685
ENST00000412056 CPNE1-014 protein_coding Homo_sapiens 0 468
ENST00000414664 CPNE1-007 protein_coding Homo_sapiens 0 1280
ENST00000414711 CPNE1-011 protein_coding Homo_sapiens 0 494
ENST00000416778 CPNE1-017 protein_coding Homo_sapiens 0 621
ENST00000420363 CPNE1-008 protein_coding Homo_sapiens 0 713
ENST00000424458 RBM12-004 protein_coding Homo_sapiens 2e-24 117
ENST00000430570 CPNE1-013 protein_coding Homo_sapiens 0 667
ENST00000434795 CPNE1-016 protein_coding Homo_sapiens 0 695
ENST00000435747 CPNE1-021 protein_coding Homo_sapiens 0 250
ENST00000437100 CPNE1-010 protein_coding Homo_sapiens 0 553
ENST00000437340 CPNE1-033 protein_coding Homo_sapiens 0 1744
ENST00000439669 CPNE1-025 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000439806 CPNE1-009 protein_coding Homo_sapiens 0 787
ENST00000440240 CPNE1-012 protein_coding Homo_sapiens 0 614
ENST00000441563 RP1-309K20.6-003 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000454607 RP1-309K20.6-002 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000458038 CPNE1-020 protein_coding Homo_sapiens 0 468
ENST00000475146 CPNE1-024 processed_transcript Homo_sapiens 0 189
ENST00000483359 CPNE1-027 retained_intron Homo_sapiens 0 617
ENST00000541176 RP1-309K20.6-001 nonsense_mediated_decay Homo_sapiens 0 438

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