C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: copine I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000214078 CPNE1 9606 - 20:35626031-35664956 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317677 CPNE1-005 35626044-35653677 protein_coding
  ENST00000352393 CPNE1-004 35626031-35664886 protein_coding
  ENST00000397442 CPNE1-032 35626066-35664875 protein_coding
  ENST00000397443 CPNE1-201 35626031-35664956 protein_coding
  ENST00000397445 CPNE1-202 35626031-35664956 protein_coding
  ENST00000401607 CPNE1-028 35626159-35664877 nonsense_mediated_decay
  ENST00000412056 CPNE1-014 35630908-35664883 protein_coding
  ENST00000414664 CPNE1-007 35630983-35664916 protein_coding
  ENST00000414711 CPNE1-011 35632210-35664837 protein_coding
  ENST00000415920 CPNE1-015 35626044-35630456 protein_coding
  ENST00000416778 CPNE1-017 35631494-35664863 protein_coding
  ENST00000420363 CPNE1-008 35631688-35664900 protein_coding
  ENST00000430570 CPNE1-013 35627285-35664932 protein_coding
  ENST00000434795 CPNE1-016 35631710-35664900 protein_coding
  ENST00000435747 CPNE1-021 35632626-35664558 protein_coding
  ENST00000437100 CPNE1-010 35632163-35664901 protein_coding
  ENST00000437340 CPNE1-033 35626252-35664956 protein_coding
  ENST00000439669 CPNE1-025 35631559-35664882 nonsense_mediated_decay
  ENST00000439806 CPNE1-009 35631512-35664932 protein_coding
  ENST00000440240 CPNE1-012 35631960-35664882 protein_coding
  ENST00000458038 CPNE1-020 35631997-35664889 protein_coding
  ENST00000462352 CPNE1-018 35626044-35626853 processed_transcript
  ENST00000473373 CPNE1-022 35626044-35627340 retained_intron
  ENST00000475146 CPNE1-024 35658930-35664900 processed_transcript
  ENST00000483359 CPNE1-027 35626058-35664861 retained_intron
  ENST00000483495 CPNE1-001 35626086-35632554 retained_intron
  ENST00000486021 CPNE1-026 35630958-35632049 retained_intron
  ENST00000498056 CPNE1-003 35626694-35627531 processed_transcript
  ENST00000498814 CPNE1-019 35626044-35627399 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLiverLungMuscleOvaryPlacentaTestisENST00000397442ENST00000397443ENST00000401607ENST00000437340
Transcript ID Adipose Liver Lung Muscle Ovary Placenta Testis
ENST00000397442 N/A N/A N/A N/A N/A 46.192±6.51 N/A
ENST00000397443 21.950±0.00 N/A 5.452±0.00 N/A 69.543±29.46 59.979±8.17 27.898±0.00
ENST00000401607 N/A 13.278±0.00 41.164±0.00 13.012±0.00 N/A N/A N/A
ENST00000437340 24.172±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FU CIL_0005FU_0001 CGP 20:35615892-35664956

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001786 IDA phosphatidylserine binding
GO:0005215 TAS transporter activity
GO:0005515 IEA protein binding
GO:0005544 TAS calcium-dependent phospholipid binding
GO:0006629 TAS lipid metabolic process
GO:0016192 TAS vesicle-mediated transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075536 cpne1 copine I protein_coding Danio_rerio
ENSMUSG00000074643 Cpne1 copine I protein_coding Mus_musculus

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