C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 6430550D23 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074646 6430550D23Rik 10090 - 2:155973279-156007977 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086145 6430550D23Rik-001 156000444-156007919 protein_coding
  ENSMUST00000109617 6430550D23Rik-201 156000444-156004427 protein_coding
  ENSMUST00000124812 6430550D23Rik-003 155973279-156007907 nonsense_mediated_decay
  ENSMUST00000138025 6430550D23Rik-002 156000610-156007923 retained_intron
  ENSMUST00000139116 6430550D23Rik-006 156003329-156004427 protein_coding
  ENSMUST00000140657 6430550D23Rik-005 156003242-156007977 protein_coding
  ENSMUST00000141437 6430550D23Rik-008 156003404-156004147 protein_coding
  ENSMUST00000144686 6430550D23Rik-004 156003149-156007919 protein_coding
  ENSMUST00000156993 6430550D23Rik-007 156003372-156004147 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverTestisENSMUST00000138025
Transcript ID Breast Heart Liver Testis
ENSMUST00000138025 2.233±0.74 0.705±0.00 1.319±0.35 6.277±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0002I5 CIL_0002I5_0002 CGP 2:155941023-155998900
CIL_0005FS CIL_0005FS_0002 CGP 2:155956458-156007977
CIL_0005FV CIL_0005FV_0002 CGP 2:155973279-156018279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000125975 C20orf173 chromosome 20 open reading frame 173 protein_coding Homo_sapiens

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