C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002I5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125965-ENSG00000126001 CGP 9606 20:35433347-35519280
GeneTranscriptPositionBiotype
ENSG00000125965 (GDF5)
growth differentiation factor 5 		ENST00000374369 (GDF5-002) 35433347-35438243 protein_coding
ENST00000374372 (GDF5-001) 35433347-35454746 protein_coding
ENSG00000204183 (GDF5OS)
growth differentiation factor 5 opposite strand 		ENST00000374375 (GDF5OS-001) 35433029-35435450 protein_coding
ENSG00000221763 (MIR1289-1)
microRNA 1289-1 		ENST00000408836 (MIR1289-1-201) 35453954-35454097 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002I5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038259-ENSMUSG00000038241 CGP 10090 2:155941023-155998900
GeneTranscriptPositionBiotype
ENSMUSG00000038241 (Cep250)
centrosomal protein 250 		ENSMUST00000039994 (Cep250-201) 155956558-155998900 protein_coding
ENSMUST00000094421 (Cep250-202) 155956558-155998900 protein_coding
ENSMUST00000109618 (Cep250-003) 155956594-155967794 protein_coding
ENSMUST00000109619 (Cep250-001) 155956558-155998900 protein_coding
ENSMUST00000128683 (Cep250-008) 155985915-155990596 nonsense_mediated_decay
ENSMUST00000148191 (Cep250-005) 155976389-155998900 retained_intron
ENSMUST00000149905 (Cep250-004) 155956458-155986613 retained_intron
ENSMUST00000151569 (Cep250-009) 155956572-155974445 protein_coding
ENSMUST00000155160 (Cep250-006) 155979558-155981445 retained_intron
ENSMUST00000156355 (Cep250-007) 155985883-155989603 protein_coding
ENSMUSG00000038259 (Gdf5)
growth differentiation factor 5 		ENSMUST00000040162 (Gdf5-001) 155941023-155945367 protein_coding
ENSMUSG00000078972 (Gm15557)
predicted gene 15557 		ENSMUST00000109629 (Gm15557-001) 155940728-155942750 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002I5_0001ENSG00000125965ENST00000374369ENST00000374372ENSG00000204183ENST00000374375ENSG00000221763ENST00000408836CIL_0002I5_0002ENSMUSG00000038241ENSMUST00000039994ENSMUST00000094421ENSMUST00000109618ENSMUST00000109619ENSMUST00000128683ENSMUST00000148191ENSMUST00000149905ENSMUST00000151569ENSMUST00000155160ENSMUST00000156355ENSMUSG00000038259ENSMUST00000040162ENSMUSG00000078972ENSMUST00000109629
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002I5_0001ENSG00000125965ENST00000374369ENST00000374372ENSG00000204183ENST00000374375ENSG00000221763ENST00000408836CIL_0002I5_0002ENSMUSG00000038241ENSMUST00000039994ENSMUST00000094421ENSMUST00000109619ENSMUST00000148191ENSMUSG00000038259ENSMUST00000040162ENSMUSG00000078972ENSMUST00000109629
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125965 ENST00000374369 N/A N/A N/A N/A 0.932±0.71 N/A 0.029±0.00 N/A N/A 2.374±2.25 0.018±0.00 0.186±0.00 N/A 0.827±0.00
ENST00000374372 0.276±0.00 0.269±0.00 N/A 0.321±0.00 0.273±0.00 0.173±0.00 0.035±0.00 0.030±0.00 0.026±0.00 N/A N/A 0.037±0.01 0.024±0.00 0.200±0.00
ENSG00000204183 ENST00000374375 0.163±0.00 0.396±0.00 N/A 0.185±0.00 N/A 0.084±0.00 0.058±0.00 0.117±0.00 0.090±0.00 N/A 0.011±0.00 N/A N/A 0.196±0.00
ENSG00000221763 ENST00000408836 N/A 0.143±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038241 ENSMUST00000039994 1.186±0.00 1.635±0.22 N/A 1.111±0.00 1.181±0.09 0.542±0.09 0.469±0.00 1.111±0.36 0.518±0.06 1.357±0.45 0.373±0.08 2.200±2.22 6.294±0.00 N/A
ENSMUST00000094421 1.132±0.03 N/A 0.714±0.00 10.483±0.00 0.852±0.16 0.644±0.00 0.497±0.18 0.465±0.05 0.728±0.48 0.773±0.00 0.330±0.00 0.793±0.04 1.469±1.05 12.941±0.00
ENSMUST00000109618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109619 1.464±0.13 0.876±0.20 1.656±0.22 5.478±1.83 1.632±0.49 1.132±0.33 0.516±0.05 1.190±0.28 1.481±1.08 1.760±0.59 0.670±0.12 3.371±3.59 2.492±0.64 4.460±3.01
ENSMUST00000128683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148191 2.606±0.00 1.103±0.36 2.351±0.28 3.529±1.32 2.050±0.78 1.575±0.35 0.449±0.11 0.970±0.17 3.989±2.68 1.384±0.40 0.418±0.12 4.020±2.69 3.554±2.87 1.341±0.24
ENSMUST00000149905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038259 ENSMUST00000040162 1.405±0.41 0.196±0.04 0.734±0.12 0.407±0.16 0.388±0.11 0.112±0.04 0.063±0.01 0.152±0.04 0.025±0.03 0.231±0.04 0.064±0.02 0.389±0.16 0.122±0.10 0.212±0.05
ENSMUSG00000078972 ENSMUST00000109629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A

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