C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and CCCH-type zinc finger domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112934 Rc3h2-001 ENSMUSG00000075376 10090 - 2:37370069-37422903 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112934
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112934 1.199±0.00 2.705±0.22 1.178±0.27 1.817±0.78 1.308±0.52 0.804±0.17 0.665±0.31 1.175±0.00 0.845±0.23 0.804±0.17 1.213±0.37 0.993±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WK CIL_0006WK_0002 CGP 2:37370069-37443171

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001782 IGI B cell homeostasis
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding
GO:0009791 IMP post-embryonic development
GO:0010468 IDA regulation of gene expression
GO:0010608 IDA posttranscriptional regulation of gene expression
GO:0035264 IMP multicellular organism growth
GO:0042098 IGI T cell proliferation
GO:0043029 IGI T cell homeostasis
GO:0048286 IMP lung alveolus development
GO:0048535 IGI lymph node development
GO:0048536 IGI spleen development
GO:0060173 IMP limb development
GO:0061470 IGI T follicular helper cell differentiation
GO:1901224 IDA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335387 RC3H2-007 protein_coding Homo_sapiens 0 2111
ENST00000357244 RC3H2-201 protein_coding Homo_sapiens 0 5439
ENST00000373670 RC3H2-001 protein_coding Homo_sapiens 0 5952
ENST00000398671 RC3H2-010 protein_coding Homo_sapiens 0 405
ENST00000423239 RC3H2-002 protein_coding Homo_sapiens 0 4674
ENST00000454740 RC3H2-008 protein_coding Homo_sapiens 0 1299
ENST00000471874 RC3H2-006 protein_coding Homo_sapiens 0 922
ENST00000478216 RC3H2-004 processed_transcript Homo_sapiens 0 220
ENST00000498479 RC3H2-003 nonsense_mediated_decay Homo_sapiens 0 3674

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