C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and CCCH-type zinc finger domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100143 Rc3h2-201 ENSMUSG00000075376 10090 - 2:37370073-37414821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100143
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100143 2.243±0.52 2.773±0.00 4.647±0.12 6.644±2.89 2.092±1.02 1.629±0.14 1.465±0.37 1.231±0.31 2.002±0.99 3.346±1.00 2.381±0.92 3.526±2.03 3.556±1.69 1.344±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WK CIL_0006WK_0002 CGP 2:37370069-37443171

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0001782 IGI B cell homeostasis
GO:0003677 IEA DNA binding
GO:0003729 IDA mRNA binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009791 IMP post-embryonic development
GO:0009986 IEA cell surface
GO:0010468 IDA regulation of gene expression
GO:0010608 IDA posttranscriptional regulation of gene expression
GO:0016020 IEA membrane
GO:0035264 IMP multicellular organism growth
GO:0042098 IGI T cell proliferation
GO:0043029 IGI T cell homeostasis
GO:0044822 IEA poly(A) RNA binding
GO:0048286 IMP lung alveolus development
GO:0048535 IGI lymph node development
GO:0048536 IGI spleen development
GO:0060173 IMP limb development
GO:0061470 IGI T follicular helper cell differentiation
GO:1901224 IDA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335387 RC3H2-007 protein_coding Homo_sapiens 0 2113
ENST00000357244 RC3H2-201 protein_coding Homo_sapiens 0 5565
ENST00000373670 RC3H2-001 protein_coding Homo_sapiens 0 6076
ENST00000398671 RC3H2-010 protein_coding Homo_sapiens 0 405
ENST00000423239 RC3H2-002 protein_coding Homo_sapiens 0 4676
ENST00000454740 RC3H2-008 protein_coding Homo_sapiens 0 1210
ENST00000471874 RC3H2-006 protein_coding Homo_sapiens 0 922
ENST00000495727 RC3H2-009 retained_intron Homo_sapiens 0 346
ENST00000498479 RC3H2-003 nonsense_mediated_decay Homo_sapiens 0 3795

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