C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: postmeiotic segregation increased 2 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148011 Pms2-001 ENSMUSG00000079109 10090 + 5:143909964-143933968 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryENSMUST00000148011
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary
ENSMUST00000148011 0.319±0.00 0.699±0.07 0.933±0.08 0.196±0.00 0.380±0.07 0.203±0.00 0.563±0.08 0.833±0.48 0.311±0.08 0.722±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AY CIL_0005AY_0002 CGP 5:143909964-143985719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003697 IBA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IBA ATP catabolic process
GO:0006281 IMP DNA repair
GO:0006298 IMP mismatch repair
GO:0006974 IGI cellular response to DNA damage stimulus
GO:0007126 TAS meiotic nuclear division
GO:0015630 IEA microtubule cytoskeleton
GO:0016446 IMP somatic hypermutation of immunoglobulin genes
GO:0016447 IMP somatic recombination of immunoglobulin gene segments
GO:0016887 IBA ATPase activity
GO:0032138 IEA single base insertion or deletion binding
GO:0032389 IDA MutLalpha complex
GO:0032407 IEA MutSalpha complex binding
GO:0042493 IEA response to drug

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265849 PMS2-001 protein_coding Homo_sapiens 0 1303
ENST00000275546 CH17-264B6.3-001 unprocessed_pseudogene Homo_sapiens 0 566
ENST00000333674 RP11-313P13.4-001 unprocessed_pseudogene Homo_sapiens 0 538
ENST00000380410 CH17-264B6.4-001 unprocessed_pseudogene Homo_sapiens 0 566
ENST00000380416 PMS2-007 retained_intron Homo_sapiens 0 614
ENST00000382321 PMS2-006 protein_coding Homo_sapiens 0 894
ENST00000394921 PMS2P3-003 processed_transcript Homo_sapiens 0 287
ENST00000398065 PMS2P5-001 unprocessed_pseudogene Homo_sapiens 0 588
ENST00000406569 PMS2-005 processed_transcript Homo_sapiens 0 1291
ENST00000412466 PMS2P4-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 558
ENST00000412694 PMS2P6-001 unprocessed_pseudogene Homo_sapiens 0 532
ENST00000414507 PMS2P4-002 processed_transcript Homo_sapiens 0 287
ENST00000415839 PMS2-002 retained_intron Homo_sapiens 0 281
ENST00000418756 PMS2P3-002 processed_transcript Homo_sapiens 0 536
ENST00000422064 PMS2P3-005 processed_transcript Homo_sapiens 0 287
ENST00000425039 PMS2L2-001 unprocessed_pseudogene Homo_sapiens 0 529
ENST00000430602 PMS2P3-004 processed_transcript Homo_sapiens 0 542
ENST00000431037 PMS2P1-001 unprocessed_pseudogene Homo_sapiens 0 433
ENST00000432573 CTA-313A17.3-001 unprocessed_pseudogene Homo_sapiens 0 425
ENST00000437568 PMS2P3-001 processed_transcript Homo_sapiens 0 281
ENST00000441237 PMS2P9-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 549
ENST00000441476 PMS2-201 protein_coding Homo_sapiens 0 857
ENST00000447708 PMS2P10-001 unprocessed_pseudogene Homo_sapiens 0 566
ENST00000451831 PMS2P11-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 555
ENST00000506558 RP11-313P13.3-001 unprocessed_pseudogene Homo_sapiens 0 564
ENST00000529061 PMS2P3-009 transcribed_unprocessed_pseudogene Homo_sapiens 0 536
ENST00000533167 PMS2P3-008 processed_transcript Homo_sapiens 0 287

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