C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: guanylate binding protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079362 Gbp6 10090 - 5:105215699-105293699 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050011 Gbp6-201 105270704-105293699 protein_coding
  ENSMUST00000065588 Gbp6-202 105215699-105239533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050011ENSMUST00000065588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050011 5.265±0.40 3.640±0.68 3.514±0.43 0.297±0.20 5.682±0.95 0.660±0.39 2.739±1.24 2.139±0.34 3.573±2.12 3.331±0.43 1.549±0.41 2.507±0.79 0.636±0.41 0.133±0.07
ENSMUST00000065588 0.504±0.04 0.350±0.11 0.297±0.16 0.216±0.19 0.932±0.16 0.032±0.00 0.061±0.04 0.329±0.09 2.613±2.93 0.135±0.02 0.721±0.18 0.156±0.10 0.134±0.17 0.021±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_000E CGP 5:105115767-105293699
CIL_00069D CIL_00069D_0002 CGP 5:105215699-105486189

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0006955 IMP immune response
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035458 IDA cellular response to interferon-beta
GO:0042742 IMP defense response to bacterium
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005627 CABZ01068209.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000034063 CABZ01068208.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000038668 gbp1 guanylate binding protein 1 protein_coding Danio_rerio
ENSDARG00000038669 gbp2 guanylate binding protein 2 protein_coding Danio_rerio
ENSDARG00000067663 si:ch211-209n20.1 si:ch211-209n20.1 protein_coding Danio_rerio
ENSDARG00000068857 gbp4 guanylate binding protein 4 protein_coding Danio_rerio
ENSDARG00000074988 si:ch211-209n20.1 si:ch211-209n20.1 protein_coding Danio_rerio
ENSG00000183347 GBP6 guanylate binding protein family, member 6 protein_coding Homo_sapiens

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