C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050011 Gbp6-201 ENSMUSG00000079362 10090 - 5:105270704-105293699 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050011
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050011 5.265±0.40 3.640±0.68 3.514±0.43 0.297±0.20 5.682±0.95 0.660±0.39 2.739±1.24 2.139±0.34 3.573±2.12 3.331±0.43 1.549±0.41 2.507±0.79 0.636±0.41 0.133±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_000E CGP 5:105115767-105293699
CIL_00069D CIL_00069D_0002 CGP 5:105215699-105486189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0006955 IMP immune response
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035458 IDA cellular response to interferon-beta
GO:0042742 IMP defense response to bacterium
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294671 GBP7-001 protein_coding Homo_sapiens 0 887
ENST00000355754 GBP4-001 protein_coding Homo_sapiens 0 957
ENST00000370456 GBP6-001 protein_coding Homo_sapiens 0 1240

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