C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065588 Gbp6-202 ENSMUSG00000079362 10090 - 5:105215699-105239533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065588 0.504±0.04 0.350±0.11 0.297±0.16 0.216±0.19 0.932±0.16 0.032±0.00 0.061±0.04 0.329±0.09 2.613±2.93 0.135±0.02 0.721±0.18 0.156±0.10 0.134±0.17 0.021±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_000E CGP 5:105115767-105293699
CIL_00069D CIL_00069D_0002 CGP 5:105215699-105486189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0031410 IDA cytoplasmic vesicle
GO:0042832 IDA defense response to protozoan
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294671 GBP7-001 protein_coding Homo_sapiens 0 869
ENST00000355754 GBP4-001 protein_coding Homo_sapiens 0 963
ENST00000370456 GBP6-001 protein_coding Homo_sapiens 0 1260
ENST00000428912 RP5-908D6.1-001 unprocessed_pseudogene Homo_sapiens 0 298

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